miRNA display CGI


Results 21 - 40 of 78 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26611 3' -56.3 NC_005357.1 + 31009 0.68 0.455653
Target:  5'- gACCUGCacgccGGCUcGCCGC-UGCUCAAGa- -3'
miRNA:   3'- -UGGAUG-----CUGA-CGGCGuGCGAGUUCcg -5'
26611 3' -56.3 NC_005357.1 + 29847 0.68 0.465776
Target:  5'- cAUCgACGGCUauuucaucGCCGCGCaGCgCGAGGCc -3'
miRNA:   3'- -UGGaUGCUGA--------CGGCGUG-CGaGUUCCG- -5'
26611 3' -56.3 NC_005357.1 + 29759 0.68 0.44565
Target:  5'- gGCCU-CGGCUGCUGCcagGCGCgugcgCGAgauuucGGCa -3'
miRNA:   3'- -UGGAuGCUGACGGCG---UGCGa----GUU------CCG- -5'
26611 3' -56.3 NC_005357.1 + 29124 0.67 0.486363
Target:  5'- cGCCUACaACgccgGCCccgGCGCGCUgCAAucGGCg -3'
miRNA:   3'- -UGGAUGcUGa---CGG---CGUGCGA-GUU--CCG- -5'
26611 3' -56.3 NC_005357.1 + 29103 0.71 0.304228
Target:  5'- gGCCcgUGCGggacuuGCUGCCGguCACGCgcgCGAGGCc -3'
miRNA:   3'- -UGG--AUGC------UGACGGC--GUGCGa--GUUCCG- -5'
26611 3' -56.3 NC_005357.1 + 29043 0.66 0.594618
Target:  5'- cGCCUACaa---CCGCGCGCU--GGGCa -3'
miRNA:   3'- -UGGAUGcugacGGCGUGCGAguUCCG- -5'
26611 3' -56.3 NC_005357.1 + 27705 0.68 0.465776
Target:  5'- uGCCUGgGGCUaCCGgGCGC--AGGGCa -3'
miRNA:   3'- -UGGAUgCUGAcGGCgUGCGagUUCCG- -5'
26611 3' -56.3 NC_005357.1 + 27688 0.68 0.44565
Target:  5'- gUCUugGAauacagGCCGCGCGCcggCAGcGGCu -3'
miRNA:   3'- uGGAugCUga----CGGCGUGCGa--GUU-CCG- -5'
26611 3' -56.3 NC_005357.1 + 27507 0.67 0.518021
Target:  5'- gGCCU-CGGCcGCCagcuucucgGCGCGgUCGGGGUc -3'
miRNA:   3'- -UGGAuGCUGaCGG---------CGUGCgAGUUCCG- -5'
26611 3' -56.3 NC_005357.1 + 27423 0.66 0.583509
Target:  5'- cGCCUGgcgcaccgcgccCGGCgGCCGCAgGC-CcuGGCg -3'
miRNA:   3'- -UGGAU------------GCUGaCGGCGUgCGaGuuCCG- -5'
26611 3' -56.3 NC_005357.1 + 27098 0.67 0.518021
Target:  5'- cCCUACGGCUcaCCGCcuGCaCUCAAGaGCg -3'
miRNA:   3'- uGGAUGCUGAc-GGCG--UGcGAGUUC-CG- -5'
26611 3' -56.3 NC_005357.1 + 26357 0.74 0.1842
Target:  5'- cAUCUACGGC-GCCGCGCGCggc-GGCc -3'
miRNA:   3'- -UGGAUGCUGaCGGCGUGCGaguuCCG- -5'
26611 3' -56.3 NC_005357.1 + 26338 0.7 0.352937
Target:  5'- cACC-GCGAacugGCCGCGcCGCUCGuaucGGCa -3'
miRNA:   3'- -UGGaUGCUga--CGGCGU-GCGAGUu---CCG- -5'
26611 3' -56.3 NC_005357.1 + 26156 0.69 0.406912
Target:  5'- aGCCUucCGGgUgGCCGCGCGC--GAGGCc -3'
miRNA:   3'- -UGGAu-GCUgA-CGGCGUGCGagUUCCG- -5'
26611 3' -56.3 NC_005357.1 + 24794 0.71 0.318279
Target:  5'- gGCCgu--ACUGCCGCACGaugcggcaaacaUCGAGGCc -3'
miRNA:   3'- -UGGaugcUGACGGCGUGCg-----------AGUUCCG- -5'
26611 3' -56.3 NC_005357.1 + 24422 0.66 0.549374
Target:  5'- aGCCggccCGAUuugucggUGCCGCGCGCggcCucGGCg -3'
miRNA:   3'- -UGGau--GCUG-------ACGGCGUGCGa--GuuCCG- -5'
26611 3' -56.3 NC_005357.1 + 24163 0.75 0.156034
Target:  5'- cGCCU-CGACgGCUGCGCGCUUc-GGCg -3'
miRNA:   3'- -UGGAuGCUGaCGGCGUGCGAGuuCCG- -5'
26611 3' -56.3 NC_005357.1 + 24026 0.69 0.416398
Target:  5'- cACCUucgcCGACgugGCCGCcaccgGCGCcaucggCAAGGCc -3'
miRNA:   3'- -UGGAu---GCUGa--CGGCG-----UGCGa-----GUUCCG- -5'
26611 3' -56.3 NC_005357.1 + 23504 0.69 0.416398
Target:  5'- gACCUGCGGCaguuccGCgaGCGCGCcuUCcAGGCg -3'
miRNA:   3'- -UGGAUGCUGa-----CGg-CGUGCG--AGuUCCG- -5'
26611 3' -56.3 NC_005357.1 + 21822 0.7 0.352937
Target:  5'- gACCUGCGAC-GCCGcCugGCg-AAGGa -3'
miRNA:   3'- -UGGAUGCUGaCGGC-GugCGagUUCCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.