miRNA display CGI


Results 21 - 40 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26612 5' -57.3 NC_005357.1 + 35340 0.72 0.207136
Target:  5'- cGCGUggGCgCGCcguggguAGGCCGCGGCGUc- -3'
miRNA:   3'- aUGCGuuCG-GCG-------UUCGGCGCUGCAcg -5'
26612 5' -57.3 NC_005357.1 + 34881 0.72 0.231154
Target:  5'- gUACGacccGGCCGCGAGCCa--GCGUGCg -3'
miRNA:   3'- -AUGCgu--UCGGCGUUCGGcgcUGCACG- -5'
26612 5' -57.3 NC_005357.1 + 34699 0.69 0.315033
Target:  5'- --aGCAAGCCG---GCCGCcgaGCGUGCg -3'
miRNA:   3'- augCGUUCGGCguuCGGCGc--UGCACG- -5'
26612 5' -57.3 NC_005357.1 + 34218 0.67 0.44932
Target:  5'- cGCGCAcgaacuGGCCGCcauGUCGCuGACGaacggGCa -3'
miRNA:   3'- aUGCGU------UCGGCGuu-CGGCG-CUGCa----CG- -5'
26612 5' -57.3 NC_005357.1 + 34196 0.76 0.112537
Target:  5'- aGCGCAAGCUGCugacGGCCGcCGACcaGCg -3'
miRNA:   3'- aUGCGUUCGGCGu---UCGGC-GCUGcaCG- -5'
26612 5' -57.3 NC_005357.1 + 33098 0.72 0.21336
Target:  5'- gAUGCc-GCCGCccGCCGCGccgACGUGCg -3'
miRNA:   3'- aUGCGuuCGGCGuuCGGCGC---UGCACG- -5'
26612 5' -57.3 NC_005357.1 + 33008 0.68 0.382696
Target:  5'- gACGCuauucAAGaCCuGCAAGcCCGCGGCcUGCg -3'
miRNA:   3'- aUGCG-----UUC-GG-CGUUC-GGCGCUGcACG- -5'
26612 5' -57.3 NC_005357.1 + 32830 0.67 0.459354
Target:  5'- cUACaCcAGCCGCAacggcuucgccuGGCCGCaGACGgucgGCg -3'
miRNA:   3'- -AUGcGuUCGGCGU------------UCGGCG-CUGCa---CG- -5'
26612 5' -57.3 NC_005357.1 + 32677 0.68 0.364903
Target:  5'- gACGUgAAGCC-CGAGCaguuCGcCGACGUGCu -3'
miRNA:   3'- aUGCG-UUCGGcGUUCG----GC-GCUGCACG- -5'
26612 5' -57.3 NC_005357.1 + 32617 0.66 0.50062
Target:  5'- aUGCGCAAacGCUGCuugacuGGUU-CGGCGUGCg -3'
miRNA:   3'- -AUGCGUU--CGGCGu-----UCGGcGCUGCACG- -5'
26612 5' -57.3 NC_005357.1 + 32614 0.73 0.196755
Target:  5'- cGCGUcaaGGGCCGCGAcGCCGCGGuCGcUGUc -3'
miRNA:   3'- aUGCG---UUCGGCGUU-CGGCGCU-GC-ACG- -5'
26612 5' -57.3 NC_005357.1 + 31717 0.68 0.410444
Target:  5'- gACGCAuucaagcaaucGGCCG-AGGCCGUGcGCGcUGCc -3'
miRNA:   3'- aUGCGU-----------UCGGCgUUCGGCGC-UGC-ACG- -5'
26612 5' -57.3 NC_005357.1 + 31294 0.66 0.50062
Target:  5'- aGCG-AAGCCugGCGA-CCGCGugGUGg -3'
miRNA:   3'- aUGCgUUCGG--CGUUcGGCGCugCACg -5'
26612 5' -57.3 NC_005357.1 + 31240 0.71 0.270488
Target:  5'- cGCGCGgcccAGCUaCGAGCCggGCGACGUGa -3'
miRNA:   3'- aUGCGU----UCGGcGUUCGG--CGCUGCACg -5'
26612 5' -57.3 NC_005357.1 + 30303 0.71 0.263576
Target:  5'- aGCGCcc-CUGCGAGCCGCuuuGCGUGUa -3'
miRNA:   3'- aUGCGuucGGCGUUCGGCGc--UGCACG- -5'
26612 5' -57.3 NC_005357.1 + 28554 0.68 0.391806
Target:  5'- -uUGC-GGCCGCcGGCCaucGCGGCGcGCa -3'
miRNA:   3'- auGCGuUCGGCGuUCGG---CGCUGCaCG- -5'
26612 5' -57.3 NC_005357.1 + 28299 0.72 0.231154
Target:  5'- aAgGCAAGCCGCuGGCCGaCGAguaCG-GCg -3'
miRNA:   3'- aUgCGUUCGGCGuUCGGC-GCU---GCaCG- -5'
26612 5' -57.3 NC_005357.1 + 28142 0.69 0.356223
Target:  5'- gACGUggGCCGCAucGCCGaCaGCaugGUGCa -3'
miRNA:   3'- aUGCGuuCGGCGUu-CGGC-GcUG---CACG- -5'
26612 5' -57.3 NC_005357.1 + 28077 0.72 0.219157
Target:  5'- --aGCGGGCaGguGGCCGCGGCGUcGUa -3'
miRNA:   3'- augCGUUCGgCguUCGGCGCUGCA-CG- -5'
26612 5' -57.3 NC_005357.1 + 27837 0.67 0.419968
Target:  5'- cGCGguGG-CGCcGGCCGCGcCGcUGCu -3'
miRNA:   3'- aUGCguUCgGCGuUCGGCGCuGC-ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.