miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26612 5' -57.3 NC_005357.1 + 41983 0.7 0.291356
Target:  5'- cGCgGCGAGCagaaggacaGCAcuaagaccaacguGGcCCGCGACGUGCu -3'
miRNA:   3'- aUG-CGUUCGg--------CGU-------------UC-GGCGCUGCACG- -5'
26612 5' -57.3 NC_005357.1 + 41458 0.66 0.47977
Target:  5'- gGCgGCcaaguGGCUGCAAGCUGCcGugG-GCa -3'
miRNA:   3'- aUG-CGu----UCGGCGUUCGGCG-CugCaCG- -5'
26612 5' -57.3 NC_005357.1 + 41395 0.67 0.428652
Target:  5'- cAUGCu-GCCGCcGGCCGUGGCcuuccagGUGUu -3'
miRNA:   3'- aUGCGuuCGGCGuUCGGCGCUG-------CACG- -5'
26612 5' -57.3 NC_005357.1 + 40752 0.72 0.20216
Target:  5'- --gGCucGCCGCGAGUccaagCGCGAgGUGCa -3'
miRNA:   3'- augCGuuCGGCGUUCG-----GCGCUgCACG- -5'
26612 5' -57.3 NC_005357.1 + 40191 0.73 0.196755
Target:  5'- uUGCGCGGccacgcGCCGCcuGCugCGCGugGUGCu -3'
miRNA:   3'- -AUGCGUU------CGGCGuuCG--GCGCugCACG- -5'
26612 5' -57.3 NC_005357.1 + 40057 0.67 0.429624
Target:  5'- cACGCGGGCgucugccacgUGCAGGCCgaauuGCGGCGcacGCg -3'
miRNA:   3'- aUGCGUUCG----------GCGUUCGG-----CGCUGCa--CG- -5'
26612 5' -57.3 NC_005357.1 + 39842 0.66 0.47977
Target:  5'- -uUGCAacagGGCgGCAAGCgCGCGcACGcGCu -3'
miRNA:   3'- auGCGU----UCGgCGUUCG-GCGC-UGCaCG- -5'
26612 5' -57.3 NC_005357.1 + 39605 0.66 0.489101
Target:  5'- cUGCGCGuGGCCGCGagcaccuGGCC-CGACGa-- -3'
miRNA:   3'- -AUGCGU-UCGGCGU-------UCGGcGCUGCacg -5'
26612 5' -57.3 NC_005357.1 + 38566 0.68 0.364903
Target:  5'- cGCGuCAGGaaGCuGGGCgGCGAgGUGCg -3'
miRNA:   3'- aUGC-GUUCggCG-UUCGgCGCUgCACG- -5'
26612 5' -57.3 NC_005357.1 + 38388 0.67 0.419968
Target:  5'- --gGCcuGCCGCucGCCGCGGcCG-GCu -3'
miRNA:   3'- augCGuuCGGCGuuCGGCGCU-GCaCG- -5'
26612 5' -57.3 NC_005357.1 + 38212 1.09 0.000362
Target:  5'- uUACGCAAGCCGCAAGCCGCGACGUGCu -3'
miRNA:   3'- -AUGCGUUCGGCGUUCGGCGCUGCACG- -5'
26612 5' -57.3 NC_005357.1 + 38021 0.67 0.468485
Target:  5'- cUACGacuGCCGCAcgcucaaGGCCcggcGCGACG-GCg -3'
miRNA:   3'- -AUGCguuCGGCGU-------UCGG----CGCUGCaCG- -5'
26612 5' -57.3 NC_005357.1 + 37628 0.66 0.511194
Target:  5'- --aGCAAucCCGCAGcGCCaGcCGGCGUGCu -3'
miRNA:   3'- augCGUUc-GGCGUU-CGG-C-GCUGCACG- -5'
26612 5' -57.3 NC_005357.1 + 37276 0.66 0.52186
Target:  5'- gGCGUGAGCaGCGacGGCCGCcuGCGcgGCa -3'
miRNA:   3'- aUGCGUUCGgCGU--UCGGCGc-UGCa-CG- -5'
26612 5' -57.3 NC_005357.1 + 37226 0.75 0.133454
Target:  5'- gACGUggGCaCGguAGCCGgcaauaucgaCGACGUGCa -3'
miRNA:   3'- aUGCGuuCG-GCguUCGGC----------GCUGCACG- -5'
26612 5' -57.3 NC_005357.1 + 37142 0.66 0.52186
Target:  5'- gACGCcguGGCCGaCAAcGCCGCGAacaucaacaCGgugGCc -3'
miRNA:   3'- aUGCGu--UCGGC-GUU-CGGCGCU---------GCa--CG- -5'
26612 5' -57.3 NC_005357.1 + 37094 0.67 0.459354
Target:  5'- aGCGCGAuGCCau--GCUGCGccACGUGCu -3'
miRNA:   3'- aUGCGUU-CGGcguuCGGCGC--UGCACG- -5'
26612 5' -57.3 NC_005357.1 + 36803 0.68 0.382696
Target:  5'- --aGCAAGCUGC--GCCGCGccACGcGCg -3'
miRNA:   3'- augCGUUCGGCGuuCGGCGC--UGCaCG- -5'
26612 5' -57.3 NC_005357.1 + 35933 0.75 0.129368
Target:  5'- cUACgGCAAGCgcgugaaUGCGGGCCugcGCGGCGUGCa -3'
miRNA:   3'- -AUG-CGUUCG-------GCGUUCGG---CGCUGCACG- -5'
26612 5' -57.3 NC_005357.1 + 35428 0.73 0.186321
Target:  5'- cACGCGAGCCGacccGCuCGCG-CGUGUg -3'
miRNA:   3'- aUGCGUUCGGCguu-CG-GCGCuGCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.