miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26612 5' -57.3 NC_005357.1 + 34699 0.69 0.315033
Target:  5'- --aGCAAGCCG---GCCGCcgaGCGUGCg -3'
miRNA:   3'- augCGUUCGGCguuCGGCGc--UGCACG- -5'
26612 5' -57.3 NC_005357.1 + 27428 0.72 0.231154
Target:  5'- gGCGCAccgcgcccggcGGCCGCAGGCCcUGGCGcUGg -3'
miRNA:   3'- aUGCGU-----------UCGGCGUUCGGcGCUGC-ACg -5'
26612 5' -57.3 NC_005357.1 + 27794 0.71 0.243701
Target:  5'- aGCGCGcGCCGCGcAGCCGCaGcACGUccucGCg -3'
miRNA:   3'- aUGCGUuCGGCGU-UCGGCG-C-UGCA----CG- -5'
26612 5' -57.3 NC_005357.1 + 30303 0.71 0.263576
Target:  5'- aGCGCcc-CUGCGAGCCGCuuuGCGUGUa -3'
miRNA:   3'- aUGCGuucGGCGUUCGGCGc--UGCACG- -5'
26612 5' -57.3 NC_005357.1 + 22232 0.71 0.270488
Target:  5'- gACGCGgcccuGGuuGUcGGCCGCGAUG-GCg -3'
miRNA:   3'- aUGCGU-----UCggCGuUCGGCGCUGCaCG- -5'
26612 5' -57.3 NC_005357.1 + 31240 0.71 0.270488
Target:  5'- cGCGCGgcccAGCUaCGAGCCggGCGACGUGa -3'
miRNA:   3'- aUGCGU----UCGGcGUUCGG--CGCUGCACg -5'
26612 5' -57.3 NC_005357.1 + 15083 0.7 0.277545
Target:  5'- -uUGCAGGCUGCuuuGCUGCGAcCGcGCg -3'
miRNA:   3'- auGCGUUCGGCGuu-CGGCGCU-GCaCG- -5'
26612 5' -57.3 NC_005357.1 + 1687 0.7 0.280408
Target:  5'- cGCGCAGguagucgagaaauucGCCGUggGCCG--GCGUGCc -3'
miRNA:   3'- aUGCGUU---------------CGGCGuuCGGCgcUGCACG- -5'
26612 5' -57.3 NC_005357.1 + 41983 0.7 0.291356
Target:  5'- cGCgGCGAGCagaaggacaGCAcuaagaccaacguGGcCCGCGACGUGCu -3'
miRNA:   3'- aUG-CGUUCGg--------CGU-------------UC-GGCGCUGCACG- -5'
26612 5' -57.3 NC_005357.1 + 28077 0.72 0.219157
Target:  5'- --aGCGGGCaGguGGCCGCGGCGUcGUa -3'
miRNA:   3'- augCGUUCGgCguUCGGCGCUGCA-CG- -5'
26612 5' -57.3 NC_005357.1 + 22526 0.72 0.21336
Target:  5'- cGCaGCGAGCaCGCGcAGCgCGCG-CGUGCc -3'
miRNA:   3'- aUG-CGUUCG-GCGU-UCG-GCGCuGCACG- -5'
26612 5' -57.3 NC_005357.1 + 25760 0.72 0.21336
Target:  5'- gGCGCGcugcugggcGGCgGCAacgauGGCCGCGAUGcGCg -3'
miRNA:   3'- aUGCGU---------UCGgCGU-----UCGGCGCUGCaCG- -5'
26612 5' -57.3 NC_005357.1 + 15333 0.77 0.097491
Target:  5'- -gUGCAGGCgGUGAGCCGUaggguucgGACGUGCg -3'
miRNA:   3'- auGCGUUCGgCGUUCGGCG--------CUGCACG- -5'
26612 5' -57.3 NC_005357.1 + 10329 0.76 0.122582
Target:  5'- cGC-CAGGCCGUAGccgucGCUGCGGCGUGUg -3'
miRNA:   3'- aUGcGUUCGGCGUU-----CGGCGCUGCACG- -5'
26612 5' -57.3 NC_005357.1 + 35933 0.75 0.129368
Target:  5'- cUACgGCAAGCgcgugaaUGCGGGCCugcGCGGCGUGCa -3'
miRNA:   3'- -AUG-CGUUCG-------GCGUUCGG---CGCUGCACG- -5'
26612 5' -57.3 NC_005357.1 + 9408 0.74 0.164159
Target:  5'- cGCGCAGGCCGCGGGCUugcaggucuugaauaGCGuCGUuggucGCg -3'
miRNA:   3'- aUGCGUUCGGCGUUCGG---------------CGCuGCA-----CG- -5'
26612 5' -57.3 NC_005357.1 + 8557 0.73 0.180792
Target:  5'- cGCGCucgaccucauccuGGGCguCGUAGGCCGCG-CGUGCg -3'
miRNA:   3'- aUGCG-------------UUCG--GCGUUCGGCGCuGCACG- -5'
26612 5' -57.3 NC_005357.1 + 35428 0.73 0.186321
Target:  5'- cACGCGAGCCGacccGCuCGCG-CGUGUg -3'
miRNA:   3'- aUGCGUUCGGCguu-CG-GCGCuGCACG- -5'
26612 5' -57.3 NC_005357.1 + 32614 0.73 0.196755
Target:  5'- cGCGUcaaGGGCCGCGAcGCCGCGGuCGcUGUc -3'
miRNA:   3'- aUGCG---UUCGGCGUU-CGGCGCU-GC-ACG- -5'
26612 5' -57.3 NC_005357.1 + 40752 0.72 0.20216
Target:  5'- --gGCucGCCGCGAGUccaagCGCGAgGUGCa -3'
miRNA:   3'- augCGuuCGGCGUUCG-----GCGCUgCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.