miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26612 5' -57.3 NC_005357.1 + 1687 0.7 0.280408
Target:  5'- cGCGCAGguagucgagaaauucGCCGUggGCCG--GCGUGCc -3'
miRNA:   3'- aUGCGUU---------------CGGCGuuCGGCgcUGCACG- -5'
26612 5' -57.3 NC_005357.1 + 1981 0.7 0.292097
Target:  5'- aAgGCAcGCUGUAGGCCGCGAgGUc- -3'
miRNA:   3'- aUgCGUuCGGCGUUCGGCGCUgCAcg -5'
26612 5' -57.3 NC_005357.1 + 2350 0.67 0.419968
Target:  5'- cGCGCGugcGCCGCAauucGGCCuGC-ACGUGg -3'
miRNA:   3'- aUGCGUu--CGGCGU----UCGG-CGcUGCACg -5'
26612 5' -57.3 NC_005357.1 + 3155 0.66 0.490143
Target:  5'- aGCGCAaccaaaaucgcAGCaugGCAAGCC-CGGCGUccGCu -3'
miRNA:   3'- aUGCGU-----------UCGg--CGUUCGGcGCUGCA--CG- -5'
26612 5' -57.3 NC_005357.1 + 3516 0.69 0.339304
Target:  5'- aGCGCGAGaaCC-CGAGa-GCGACGUGCc -3'
miRNA:   3'- aUGCGUUC--GGcGUUCggCGCUGCACG- -5'
26612 5' -57.3 NC_005357.1 + 3870 0.68 0.391806
Target:  5'- gGCGCcgucGCUGUAGGCCGCGcugcCGUcGCc -3'
miRNA:   3'- aUGCGuu--CGGCGUUCGGCGCu---GCA-CG- -5'
26612 5' -57.3 NC_005357.1 + 4025 0.69 0.339304
Target:  5'- aGCGaUAGGCUucaaaGCcGGCCGCGGCGaGCg -3'
miRNA:   3'- aUGC-GUUCGG-----CGuUCGGCGCUGCaCG- -5'
26612 5' -57.3 NC_005357.1 + 4200 0.73 0.186321
Target:  5'- cAUGUuGGCCGCGAGCacguCGCGGCuUGCg -3'
miRNA:   3'- aUGCGuUCGGCGUUCG----GCGCUGcACG- -5'
26612 5' -57.3 NC_005357.1 + 4381 0.66 0.511194
Target:  5'- aUGCGCAGccaggcGCCGuCGcGCCGgGccuugaGCGUGCg -3'
miRNA:   3'- -AUGCGUU------CGGC-GUuCGGCgC------UGCACG- -5'
26612 5' -57.3 NC_005357.1 + 4426 0.72 0.219157
Target:  5'- -uCGUAGGUCGUAcccGGCCGCaacaccgccaGGCGUGCg -3'
miRNA:   3'- auGCGUUCGGCGU---UCGGCG----------CUGCACG- -5'
26612 5' -57.3 NC_005357.1 + 4922 0.66 0.511194
Target:  5'- aACGUcGGCaGCGAuGcCCGCGACGgucUGCa -3'
miRNA:   3'- aUGCGuUCGgCGUU-C-GGCGCUGC---ACG- -5'
26612 5' -57.3 NC_005357.1 + 5012 0.67 0.419968
Target:  5'- gGCGCAGuCCGCuuucagcGCCGCGAUGccccGCu -3'
miRNA:   3'- aUGCGUUcGGCGuu-----CGGCGCUGCa---CG- -5'
26612 5' -57.3 NC_005357.1 + 5242 0.68 0.401056
Target:  5'- cGCGCAguucGGCCgGCAGGUCGgGGuCG-GCa -3'
miRNA:   3'- aUGCGU----UCGG-CGUUCGGCgCU-GCaCG- -5'
26612 5' -57.3 NC_005357.1 + 5319 0.79 0.075086
Target:  5'- -cCGUAGGCCGCGAGCaCGUGGCGcaGCa -3'
miRNA:   3'- auGCGUUCGGCGUUCG-GCGCUGCa-CG- -5'
26612 5' -57.3 NC_005357.1 + 6176 0.72 0.20216
Target:  5'- aGCGCAGGCCGgucuuGCCGCaGCGUuuGCa -3'
miRNA:   3'- aUGCGUUCGGCguu--CGGCGcUGCA--CG- -5'
26612 5' -57.3 NC_005357.1 + 6281 0.66 0.52186
Target:  5'- cUGgGCAGGCCGaaCAGGUCGCccacgacauuGACG-GCa -3'
miRNA:   3'- -AUgCGUUCGGC--GUUCGGCG----------CUGCaCG- -5'
26612 5' -57.3 NC_005357.1 + 7158 0.68 0.391806
Target:  5'- gACGUugAAGCC-CAGGCC-CGACGcGCu -3'
miRNA:   3'- aUGCG--UUCGGcGUUCGGcGCUGCaCG- -5'
26612 5' -57.3 NC_005357.1 + 7250 0.71 0.263576
Target:  5'- gGCGCGGGCCGau-GUCGCcGGCcuuGUGCa -3'
miRNA:   3'- aUGCGUUCGGCguuCGGCG-CUG---CACG- -5'
26612 5' -57.3 NC_005357.1 + 8123 0.67 0.429624
Target:  5'- cGCGC-GGCCgGCGuuGGuuGUGgGCGUGCg -3'
miRNA:   3'- aUGCGuUCGG-CGU--UCggCGC-UGCACG- -5'
26612 5' -57.3 NC_005357.1 + 8392 0.67 0.459354
Target:  5'- cGCGCuGGCUGCGuagccagucGGCCaGgGcCGUGCg -3'
miRNA:   3'- aUGCGuUCGGCGU---------UCGG-CgCuGCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.