Results 1 - 20 of 133 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26612 | 5' | -57.3 | NC_005357.1 | + | 38212 | 1.09 | 0.000362 |
Target: 5'- uUACGCAAGCCGCAAGCCGCGACGUGCu -3' miRNA: 3'- -AUGCGUUCGGCGUUCGGCGCUGCACG- -5' |
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26612 | 5' | -57.3 | NC_005357.1 | + | 5319 | 0.79 | 0.075086 |
Target: 5'- -cCGUAGGCCGCGAGCaCGUGGCGcaGCa -3' miRNA: 3'- auGCGUUCGGCGUUCG-GCGCUGCa-CG- -5' |
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26612 | 5' | -57.3 | NC_005357.1 | + | 16160 | 0.78 | 0.081943 |
Target: 5'- aUGCGCGAGCCGacCAGGCCGgCGGgugccCGUGCc -3' miRNA: 3'- -AUGCGUUCGGC--GUUCGGC-GCU-----GCACG- -5' |
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26612 | 5' | -57.3 | NC_005357.1 | + | 15333 | 0.77 | 0.097491 |
Target: 5'- -gUGCAGGCgGUGAGCCGUaggguucgGACGUGCg -3' miRNA: 3'- auGCGUUCGgCGUUCGGCG--------CUGCACG- -5' |
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26612 | 5' | -57.3 | NC_005357.1 | + | 34196 | 0.76 | 0.112537 |
Target: 5'- aGCGCAAGCUGCugacGGCCGcCGACcaGCg -3' miRNA: 3'- aUGCGUUCGGCGu---UCGGC-GCUGcaCG- -5' |
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26612 | 5' | -57.3 | NC_005357.1 | + | 10329 | 0.76 | 0.122582 |
Target: 5'- cGC-CAGGCCGUAGccgucGCUGCGGCGUGUg -3' miRNA: 3'- aUGcGUUCGGCGUU-----CGGCGCUGCACG- -5' |
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26612 | 5' | -57.3 | NC_005357.1 | + | 35933 | 0.75 | 0.129368 |
Target: 5'- cUACgGCAAGCgcgugaaUGCGGGCCugcGCGGCGUGCa -3' miRNA: 3'- -AUG-CGUUCG-------GCGUUCGG---CGCUGCACG- -5' |
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26612 | 5' | -57.3 | NC_005357.1 | + | 37226 | 0.75 | 0.133454 |
Target: 5'- gACGUggGCaCGguAGCCGgcaauaucgaCGACGUGCa -3' miRNA: 3'- aUGCGuuCG-GCguUCGGC----------GCUGCACG- -5' |
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26612 | 5' | -57.3 | NC_005357.1 | + | 9408 | 0.74 | 0.164159 |
Target: 5'- cGCGCAGGCCGCGGGCUugcaggucuugaauaGCGuCGUuggucGCg -3' miRNA: 3'- aUGCGUUCGGCGUUCGG---------------CGCuGCA-----CG- -5' |
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26612 | 5' | -57.3 | NC_005357.1 | + | 8557 | 0.73 | 0.180792 |
Target: 5'- cGCGCucgaccucauccuGGGCguCGUAGGCCGCG-CGUGCg -3' miRNA: 3'- aUGCG-------------UUCG--GCGUUCGGCGCuGCACG- -5' |
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26612 | 5' | -57.3 | NC_005357.1 | + | 17957 | 0.73 | 0.181289 |
Target: 5'- gGCGCAGGCaagcaGCAGGUCGuCGGCGUc- -3' miRNA: 3'- aUGCGUUCGg----CGUUCGGC-GCUGCAcg -5' |
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26612 | 5' | -57.3 | NC_005357.1 | + | 12293 | 0.73 | 0.181289 |
Target: 5'- gACGCGG--UGCAGGCCgGCGGCGUGUu -3' miRNA: 3'- aUGCGUUcgGCGUUCGG-CGCUGCACG- -5' |
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26612 | 5' | -57.3 | NC_005357.1 | + | 35428 | 0.73 | 0.186321 |
Target: 5'- cACGCGAGCCGacccGCuCGCG-CGUGUg -3' miRNA: 3'- aUGCGUUCGGCguu-CG-GCGCuGCACG- -5' |
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26612 | 5' | -57.3 | NC_005357.1 | + | 4200 | 0.73 | 0.186321 |
Target: 5'- cAUGUuGGCCGCGAGCacguCGCGGCuUGCg -3' miRNA: 3'- aUGCGuUCGGCGUUCG----GCGCUGcACG- -5' |
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26612 | 5' | -57.3 | NC_005357.1 | + | 16283 | 0.73 | 0.194628 |
Target: 5'- gACgGCGAGCCGCugcgccaaaucuGCCGCGACGaacacaUGCc -3' miRNA: 3'- aUG-CGUUCGGCGuu----------CGGCGCUGC------ACG- -5' |
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26612 | 5' | -57.3 | NC_005357.1 | + | 8955 | 0.73 | 0.196221 |
Target: 5'- aGCGguGGCCGU--GCCGCGAuagccagcguggcCGUGCc -3' miRNA: 3'- aUGCguUCGGCGuuCGGCGCU-------------GCACG- -5' |
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26612 | 5' | -57.3 | NC_005357.1 | + | 40191 | 0.73 | 0.196755 |
Target: 5'- uUGCGCGGccacgcGCCGCcuGCugCGCGugGUGCu -3' miRNA: 3'- -AUGCGUU------CGGCGuuCG--GCGCugCACG- -5' |
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26612 | 5' | -57.3 | NC_005357.1 | + | 32614 | 0.73 | 0.196755 |
Target: 5'- cGCGUcaaGGGCCGCGAcGCCGCGGuCGcUGUc -3' miRNA: 3'- aUGCG---UUCGGCGUU-CGGCGCU-GC-ACG- -5' |
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26612 | 5' | -57.3 | NC_005357.1 | + | 9050 | 0.72 | 0.200525 |
Target: 5'- aGCGguGGCCGU--GCCGCGAuagccagcgguggcCGUGCc -3' miRNA: 3'- aUGCguUCGGCGuuCGGCGCU--------------GCACG- -5' |
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26612 | 5' | -57.3 | NC_005357.1 | + | 9002 | 0.72 | 0.200525 |
Target: 5'- aGCGguGGCCGU--GCCGCGAuagccagcgguggcCGUGCc -3' miRNA: 3'- aUGCguUCGGCGuuCGGCGCU--------------GCACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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