miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26612 5' -57.3 NC_005357.1 + 5319 0.79 0.075086
Target:  5'- -cCGUAGGCCGCGAGCaCGUGGCGcaGCa -3'
miRNA:   3'- auGCGUUCGGCGUUCG-GCGCUGCa-CG- -5'
26612 5' -57.3 NC_005357.1 + 35340 0.72 0.207136
Target:  5'- cGCGUggGCgCGCcguggguAGGCCGCGGCGUc- -3'
miRNA:   3'- aUGCGuuCG-GCG-------UUCGGCGCUGCAcg -5'
26612 5' -57.3 NC_005357.1 + 33098 0.72 0.21336
Target:  5'- gAUGCc-GCCGCccGCCGCGccgACGUGCg -3'
miRNA:   3'- aUGCGuuCGGCGuuCGGCGC---UGCACG- -5'
26612 5' -57.3 NC_005357.1 + 12666 0.65 0.530454
Target:  5'- cGCGCAcgcgccuggcagcAGCCG-AGGCCGaguucuaCGGCGUGg -3'
miRNA:   3'- aUGCGU-------------UCGGCgUUCGGC-------GCUGCACg -5'
26612 5' -57.3 NC_005357.1 + 12293 0.73 0.181289
Target:  5'- gACGCGG--UGCAGGCCgGCGGCGUGUu -3'
miRNA:   3'- aUGCGUUcgGCGUUCGG-CGCUGCACG- -5'
26612 5' -57.3 NC_005357.1 + 17957 0.73 0.181289
Target:  5'- gGCGCAGGCaagcaGCAGGUCGuCGGCGUc- -3'
miRNA:   3'- aUGCGUUCGg----CGUUCGGC-GCUGCAcg -5'
26612 5' -57.3 NC_005357.1 + 16283 0.73 0.194628
Target:  5'- gACgGCGAGCCGCugcgccaaaucuGCCGCGACGaacacaUGCc -3'
miRNA:   3'- aUG-CGUUCGGCGuu----------CGGCGCUGC------ACG- -5'
26612 5' -57.3 NC_005357.1 + 8955 0.73 0.196221
Target:  5'- aGCGguGGCCGU--GCCGCGAuagccagcguggcCGUGCc -3'
miRNA:   3'- aUGCguUCGGCGuuCGGCGCU-------------GCACG- -5'
26612 5' -57.3 NC_005357.1 + 9050 0.72 0.200525
Target:  5'- aGCGguGGCCGU--GCCGCGAuagccagcgguggcCGUGCc -3'
miRNA:   3'- aUGCguUCGGCGuuCGGCGCU--------------GCACG- -5'
26612 5' -57.3 NC_005357.1 + 6176 0.72 0.20216
Target:  5'- aGCGCAGGCCGgucuuGCCGCaGCGUuuGCa -3'
miRNA:   3'- aUGCGUUCGGCguu--CGGCGcUGCA--CG- -5'
26612 5' -57.3 NC_005357.1 + 9146 0.72 0.200525
Target:  5'- aGCGguGGCCGU--GCCGCGAuagccagcgguggcCGUGCc -3'
miRNA:   3'- aUGCguUCGGCGuuCGGCGCU--------------GCACG- -5'
26612 5' -57.3 NC_005357.1 + 9002 0.72 0.200525
Target:  5'- aGCGguGGCCGU--GCCGCGAuagccagcgguggcCGUGCc -3'
miRNA:   3'- aUGCguUCGGCGuuCGGCGCU--------------GCACG- -5'
26612 5' -57.3 NC_005357.1 + 16160 0.78 0.081943
Target:  5'- aUGCGCGAGCCGacCAGGCCGgCGGgugccCGUGCc -3'
miRNA:   3'- -AUGCGUUCGGC--GUUCGGC-GCU-----GCACG- -5'
26612 5' -57.3 NC_005357.1 + 9194 0.72 0.200525
Target:  5'- aGCGguGGCCGU--GCCGCGAuagccagcgguggcCGUGCc -3'
miRNA:   3'- aUGCguUCGGCGuuCGGCGCU--------------GCACG- -5'
26612 5' -57.3 NC_005357.1 + 34196 0.76 0.112537
Target:  5'- aGCGCAAGCUGCugacGGCCGcCGACcaGCg -3'
miRNA:   3'- aUGCGUUCGGCGu---UCGGC-GCUGcaCG- -5'
26612 5' -57.3 NC_005357.1 + 40191 0.73 0.196755
Target:  5'- uUGCGCGGccacgcGCCGCcuGCugCGCGugGUGCu -3'
miRNA:   3'- -AUGCGUU------CGGCGuuCG--GCGCugCACG- -5'
26612 5' -57.3 NC_005357.1 + 26292 0.72 0.20216
Target:  5'- aGCGUGcGGCCGCAguccuacgucggGGCCacCGACGUGCa -3'
miRNA:   3'- aUGCGU-UCGGCGU------------UCGGc-GCUGCACG- -5'
26612 5' -57.3 NC_005357.1 + 14725 0.72 0.21336
Target:  5'- gGCgGCGAGCCGCugccGGCgCGCGGCcUGUa -3'
miRNA:   3'- aUG-CGUUCGGCGu---UCG-GCGCUGcACG- -5'
26612 5' -57.3 NC_005357.1 + 37226 0.75 0.133454
Target:  5'- gACGUggGCaCGguAGCCGgcaauaucgaCGACGUGCa -3'
miRNA:   3'- aUGCGuuCG-GCguUCGGC----------GCUGCACG- -5'
26612 5' -57.3 NC_005357.1 + 4200 0.73 0.186321
Target:  5'- cAUGUuGGCCGCGAGCacguCGCGGCuUGCg -3'
miRNA:   3'- aUGCGuUCGGCGUUCG----GCGCUGcACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.