miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26614 3' -55.5 NC_005357.1 + 42183 0.66 0.573277
Target:  5'- --cGGCACCAC-CgGGGAaacccAGCGcGCCAa -3'
miRNA:   3'- ucaCCGUGGUGuGgUUCU-----UCGU-CGGU- -5'
26614 3' -55.5 NC_005357.1 + 41823 0.66 0.562033
Target:  5'- --cGGCGCUGCugGCCGAcccgcAGGCGGCCAu -3'
miRNA:   3'- ucaCCGUGGUG--UGGUUc----UUCGUCGGU- -5'
26614 3' -55.5 NC_005357.1 + 41446 0.67 0.485463
Target:  5'- --cGGCACCG-GCCA---GGCGGCCAa -3'
miRNA:   3'- ucaCCGUGGUgUGGUucuUCGUCGGU- -5'
26614 3' -55.5 NC_005357.1 + 40835 0.66 0.562033
Target:  5'- ---cGCACUcgacCACCAGGAaggcGGCGGCCAc -3'
miRNA:   3'- ucacCGUGGu---GUGGUUCU----UCGUCGGU- -5'
26614 3' -55.5 NC_005357.1 + 39990 0.67 0.528699
Target:  5'- cGUGGCGCCGauCUucGAGGcCGGCCu -3'
miRNA:   3'- uCACCGUGGUguGGuuCUUC-GUCGGu -5'
26614 3' -55.5 NC_005357.1 + 39383 0.66 0.562033
Target:  5'- cGU-GCugCugACCAGGAuggAGCAGCa- -3'
miRNA:   3'- uCAcCGugGugUGGUUCU---UCGUCGgu -5'
26614 3' -55.5 NC_005357.1 + 38942 1.08 0.000582
Target:  5'- aAGUGGCACCACACCAAGAAGCAGCCAu -3'
miRNA:   3'- -UCACCGUGGUGUGGUUCUUCGUCGGU- -5'
26614 3' -55.5 NC_005357.1 + 38285 0.66 0.55085
Target:  5'- aGGUGGgcggcuucCACUauGCGCCGGGAAGCAacGCUg -3'
miRNA:   3'- -UCACC--------GUGG--UGUGGUUCUUCGU--CGGu -5'
26614 3' -55.5 NC_005357.1 + 38242 0.67 0.485463
Target:  5'- --cGGCcaacauGCC-CGCCAucGAGGCGGCCGg -3'
miRNA:   3'- ucaCCG------UGGuGUGGUu-CUUCGUCGGU- -5'
26614 3' -55.5 NC_005357.1 + 37933 0.69 0.414219
Target:  5'- uGUGGCGCCGCGCgCAuccGGCGGUUu -3'
miRNA:   3'- uCACCGUGGUGUG-GUucuUCGUCGGu -5'
26614 3' -55.5 NC_005357.1 + 37693 0.66 0.55085
Target:  5'- nGUGGCcgagaacaucGCgGuCAUCAucGAAGCAGCCAa -3'
miRNA:   3'- uCACCG----------UGgU-GUGGUu-CUUCGUCGGU- -5'
26614 3' -55.5 NC_005357.1 + 37657 0.67 0.496122
Target:  5'- --gGGCGCagugugggcgaACGCCGAGAAcaucGCGGCCGu -3'
miRNA:   3'- ucaCCGUGg----------UGUGGUUCUU----CGUCGGU- -5'
26614 3' -55.5 NC_005357.1 + 37497 0.68 0.464483
Target:  5'- cGUGGCGCC-CGagggCAAGAAGCuGGUCGu -3'
miRNA:   3'- uCACCGUGGuGUg---GUUCUUCG-UCGGU- -5'
26614 3' -55.5 NC_005357.1 + 36272 0.66 0.595911
Target:  5'- gGGUGcccGUGCCuCACCccugGGGAAGUAGCCu -3'
miRNA:   3'- -UCAC---CGUGGuGUGG----UUCUUCGUCGGu -5'
26614 3' -55.5 NC_005357.1 + 35974 0.67 0.539736
Target:  5'- cGUGGUGCgugaguuCgGGGAAGCAGCCAa -3'
miRNA:   3'- uCACCGUGgugu---GgUUCUUCGUCGGU- -5'
26614 3' -55.5 NC_005357.1 + 34880 0.7 0.349776
Target:  5'- cGGUGGCGCCGCGgaUCGAGcacGCcGCCGa -3'
miRNA:   3'- -UCACCGUGGUGU--GGUUCuu-CGuCGGU- -5'
26614 3' -55.5 NC_005357.1 + 34508 0.67 0.539736
Target:  5'- aGGUGGaCGCCGaGCgCAAcGAGCAGCUg -3'
miRNA:   3'- -UCACC-GUGGUgUG-GUUcUUCGUCGGu -5'
26614 3' -55.5 NC_005357.1 + 33746 0.66 0.55085
Target:  5'- --cGGCG-CACACCuGGGcggcgcAGCAGCCGc -3'
miRNA:   3'- ucaCCGUgGUGUGGuUCU------UCGUCGGU- -5'
26614 3' -55.5 NC_005357.1 + 33226 0.71 0.300471
Target:  5'- cGU-GCGCCGCGCCGccGAGCAGgCCAa -3'
miRNA:   3'- uCAcCGUGGUGUGGUucUUCGUC-GGU- -5'
26614 3' -55.5 NC_005357.1 + 33121 0.67 0.506885
Target:  5'- cGUGcGcCGCCAgguCGCCGAGGAagucaaugcGCAGCCGg -3'
miRNA:   3'- uCAC-C-GUGGU---GUGGUUCUU---------CGUCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.