miRNA display CGI


Results 41 - 60 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26616 3' -62.4 NC_005357.1 + 14724 0.72 0.102882
Target:  5'- ---cGGCGGCGAGC-CGCuGCcgGCGCGCg -3'
miRNA:   3'- ugucCCGCCGUUCGcGCG-CG--UGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 14852 0.7 0.146842
Target:  5'- ---uGGCGGCcAGCGC-CGCACGCuggGCg -3'
miRNA:   3'- ugucCCGCCGuUCGCGcGCGUGCG---CG- -5'
26616 3' -62.4 NC_005357.1 + 14993 0.72 0.114892
Target:  5'- cCAGGGCcugcGGCcgccGGGCGCgguGCGCcagGCGCGCg -3'
miRNA:   3'- uGUCCCG----CCG----UUCGCG---CGCG---UGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 15252 0.67 0.254401
Target:  5'- gGCaAGGGUcgucgaGGCAucCGCGUGCGgCGCGUg -3'
miRNA:   3'- -UG-UCCCG------CCGUucGCGCGCGU-GCGCG- -5'
26616 3' -62.4 NC_005357.1 + 15604 0.66 0.302525
Target:  5'- uCGGGGCGGCGcAGCcUGCcaaaaacaGCACGCc- -3'
miRNA:   3'- uGUCCCGCCGU-UCGcGCG--------CGUGCGcg -5'
26616 3' -62.4 NC_005357.1 + 16173 0.73 0.089528
Target:  5'- cCAGGcCGGCGGGUGCccgugccuucgGCGaCGCGCGCa -3'
miRNA:   3'- uGUCCcGCCGUUCGCG-----------CGC-GUGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 16613 0.68 0.195221
Target:  5'- aACGGcGGCccgguGCAgaucaacgauaccgAGCGCGC-CGCGCGCa -3'
miRNA:   3'- -UGUC-CCGc----CGU--------------UCGCGCGcGUGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 16935 0.67 0.235779
Target:  5'- gUAGGGCacGGCGccguccAGCaGCGUGC-CGCGUu -3'
miRNA:   3'- uGUCCCG--CCGU------UCG-CGCGCGuGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 17710 0.69 0.172449
Target:  5'- cCGGGaaaugcccaucGCGGCAAGCuGCGCGCAUuuggugGCGa -3'
miRNA:   3'- uGUCC-----------CGCCGUUCG-CGCGCGUG------CGCg -5'
26616 3' -62.4 NC_005357.1 + 17765 0.69 0.177087
Target:  5'- uGCAGuucgaGCaGCGAGuCGCGCGCgaacggauagaaGCGCGCg -3'
miRNA:   3'- -UGUCc----CGcCGUUC-GCGCGCG------------UGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 19856 0.66 0.295241
Target:  5'- aGCAGcGUGGUGAGUucggGCGUGCcgaaggcgucGCGCGCc -3'
miRNA:   3'- -UGUCcCGCCGUUCG----CGCGCG----------UGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 19892 0.7 0.150855
Target:  5'- aACAc--CGGCAcGCGCGCGCuGCGCGUg -3'
miRNA:   3'- -UGUcccGCCGUuCGCGCGCG-UGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 20014 0.66 0.274212
Target:  5'- -aAGGcGUGGCuGGCGaaCGuCACGCGCu -3'
miRNA:   3'- ugUCC-CGCCGuUCGCgcGC-GUGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 21242 0.66 0.302525
Target:  5'- cGCAGaccaGCaGCAGGC-CGCGCAgcaggcCGCGCu -3'
miRNA:   3'- -UGUCc---CGcCGUUCGcGCGCGU------GCGCG- -5'
26616 3' -62.4 NC_005357.1 + 21460 0.67 0.260871
Target:  5'- -gGGGGCGGCAGGaUGUugGCcucgacCAUGCGCu -3'
miRNA:   3'- ugUCCCGCCGUUC-GCG--CGc-----GUGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 22526 0.7 0.146842
Target:  5'- cGCA--GCGaGCAcGCGCaGCGCGCGCGUg -3'
miRNA:   3'- -UGUccCGC-CGUuCGCG-CGCGUGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 24075 0.7 0.139106
Target:  5'- cACAGuaGCGGCGAcCGCGCgggGCACGgGCa -3'
miRNA:   3'- -UGUCc-CGCCGUUcGCGCG---CGUGCgCG- -5'
26616 3' -62.4 NC_005357.1 + 24274 0.74 0.080048
Target:  5'- aACAGGGCuauuucGGCAAGCuGCGCGagcCGgGCg -3'
miRNA:   3'- -UGUCCCG------CCGUUCG-CGCGCgu-GCgCG- -5'
26616 3' -62.4 NC_005357.1 + 24628 0.72 0.100069
Target:  5'- uGCA-GGCGGaauacuGCGCGCGCuucuauccguucGCGCGCg -3'
miRNA:   3'- -UGUcCCGCCguu---CGCGCGCG------------UGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 25000 0.66 0.295241
Target:  5'- gGCGGGGCcacugcucaagGGCGA-CGUGgGCGC-CGCu -3'
miRNA:   3'- -UGUCCCG-----------CCGUUcGCGCgCGUGcGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.