miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26616 3' -62.4 NC_005357.1 + 8284 0.69 0.174291
Target:  5'- cCAGGGCcacgcugccggGGCAgugcagccagcGGUGCGCGCugcucggggaaaguuGCGCGUg -3'
miRNA:   3'- uGUCCCG-----------CCGU-----------UCGCGCGCG---------------UGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 8574 0.66 0.295241
Target:  5'- --uGGGCGucGUAGGcCGCGCGUGCG-GCc -3'
miRNA:   3'- uguCCCGC--CGUUC-GCGCGCGUGCgCG- -5'
26616 3' -62.4 NC_005357.1 + 8663 0.72 0.114892
Target:  5'- cGCGcGGuCGGCAuuGCGUGC-CGCGCGCa -3'
miRNA:   3'- -UGUcCC-GCCGUu-CGCGCGcGUGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 8674 0.7 0.146842
Target:  5'- uGCAGcGGCuGCugcgccgcccAGGUGUGCGC-CGCGCa -3'
miRNA:   3'- -UGUC-CCGcCG----------UUCGCGCGCGuGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 9206 0.68 0.212744
Target:  5'- uGCucGGCGGCGcGGCGCaCGUucugcgGCGCGCc -3'
miRNA:   3'- -UGucCCGCCGU-UCGCGcGCG------UGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 9316 0.66 0.267474
Target:  5'- gACcuGGCGGCGcacgucGGCGCG-GCGgGCGg -3'
miRNA:   3'- -UGucCCGCCGU------UCGCGCgCGUgCGCg -5'
26616 3' -62.4 NC_005357.1 + 9977 0.68 0.223435
Target:  5'- aGCAGGaaaCGGUGAGCGUggcggggucgaaaGUGC-CGCGCg -3'
miRNA:   3'- -UGUCCc--GCCGUUCGCG-------------CGCGuGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 10129 0.66 0.281086
Target:  5'- ---uGGCGGCGaugaGGU-CGCGCaACGCGCu -3'
miRNA:   3'- ugucCCGCCGU----UCGcGCGCG-UGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 10332 0.66 0.281086
Target:  5'- cCAGGGCGuugaGCAAcGCGgcCGUGUugGCGg -3'
miRNA:   3'- uGUCCCGC----CGUU-CGC--GCGCGugCGCg -5'
26616 3' -62.4 NC_005357.1 + 10563 0.66 0.273533
Target:  5'- -gGGGGUcuugcacGGCGAGgGCGUGC-CGCa- -3'
miRNA:   3'- ugUCCCG-------CCGUUCgCGCGCGuGCGcg -5'
26616 3' -62.4 NC_005357.1 + 10858 0.69 0.186695
Target:  5'- aGCAGGcccugcGUGGCuucggucGGCGCGaUGCGCGCGg -3'
miRNA:   3'- -UGUCC------CGCCGu------UCGCGC-GCGUGCGCg -5'
26616 3' -62.4 NC_005357.1 + 11407 0.7 0.159181
Target:  5'- cCAGGgucuugagcaGCGGCGAGCcgGCGUGCAgGuCGCc -3'
miRNA:   3'- uGUCC----------CGCCGUUCG--CGCGCGUgC-GCG- -5'
26616 3' -62.4 NC_005357.1 + 12125 0.73 0.084662
Target:  5'- gGCAGGuuGGCGcGaCGCGC-CACGCGCu -3'
miRNA:   3'- -UGUCCcgCCGUuC-GCGCGcGUGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 12300 0.71 0.118094
Target:  5'- uGCAGGcCGGC-GGCGUGUuCugGCGCg -3'
miRNA:   3'- -UGUCCcGCCGuUCGCGCGcGugCGCG- -5'
26616 3' -62.4 NC_005357.1 + 12993 0.73 0.09466
Target:  5'- aGCAccuGGGCGcgacguGCGAGCGCGUGggcaACGCGCc -3'
miRNA:   3'- -UGU---CCCGC------CGUUCGCGCGCg---UGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 13645 0.7 0.154967
Target:  5'- ---cGGCaaccagGGCAAGCGCGaCGCcguGCGCGCc -3'
miRNA:   3'- ugucCCG------CCGUUCGCGC-GCG---UGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 14219 0.7 0.165254
Target:  5'- cGCAGcGCGGCuuccuuggcgcgguuAAGUGCGuCGUccACGCGCa -3'
miRNA:   3'- -UGUCcCGCCG---------------UUCGCGC-GCG--UGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 14412 0.66 0.295241
Target:  5'- aGCuGGGCGucgcCAGGCGCGCcugcgGCAcCGUGUu -3'
miRNA:   3'- -UGuCCCGCc---GUUCGCGCG-----CGU-GCGCG- -5'
26616 3' -62.4 NC_005357.1 + 14593 0.74 0.075676
Target:  5'- aGCGGcGCGGCcGGCGCcaccgcggGCaGCGCGCGCg -3'
miRNA:   3'- -UGUCcCGCCGuUCGCG--------CG-CGUGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 14629 0.71 0.135013
Target:  5'- -gAGGacgugcuGCGGCu-GCGCG-GCGCGCGCu -3'
miRNA:   3'- ugUCC-------CGCCGuuCGCGCgCGUGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.