miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26616 3' -62.4 NC_005357.1 + 12300 0.71 0.118094
Target:  5'- uGCAGGcCGGC-GGCGUGUuCugGCGCg -3'
miRNA:   3'- -UGUCCcGCCGuUCGCGCGcGugCGCG- -5'
26616 3' -62.4 NC_005357.1 + 7892 0.71 0.121378
Target:  5'- cCAGGGCGGC--GCGUGCGUAgauCGCcaGCu -3'
miRNA:   3'- uGUCCCGCCGuuCGCGCGCGU---GCG--CG- -5'
26616 3' -62.4 NC_005357.1 + 34042 0.71 0.129609
Target:  5'- cACGuGGGCGGCGauucucgaagauucgAGCGCG-GCG-GCGCa -3'
miRNA:   3'- -UGU-CCCGCCGU---------------UCGCGCgCGUgCGCG- -5'
26616 3' -62.4 NC_005357.1 + 4643 0.71 0.130674
Target:  5'- cGCAGGGuCGGCAAGaUcggacagguuguugGCGgGCACcaGCGCg -3'
miRNA:   3'- -UGUCCC-GCCGUUC-G--------------CGCgCGUG--CGCG- -5'
26616 3' -62.4 NC_005357.1 + 14629 0.71 0.135013
Target:  5'- -gAGGacgugcuGCGGCu-GCGCG-GCGCGCGCu -3'
miRNA:   3'- ugUCC-------CGCCGuuCGCGCgCGUGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 35921 0.71 0.13538
Target:  5'- cGCAGGacacaacuaCGGCAAGCGCGUGaauGCGgGCc -3'
miRNA:   3'- -UGUCCc--------GCCGUUCGCGCGCg--UGCgCG- -5'
26616 3' -62.4 NC_005357.1 + 24075 0.7 0.139106
Target:  5'- cACAGuaGCGGCGAcCGCGCgggGCACGgGCa -3'
miRNA:   3'- -UGUCc-CGCCGUUcGCGCG---CGUGCgCG- -5'
26616 3' -62.4 NC_005357.1 + 34640 0.7 0.139106
Target:  5'- uGCuGGGCGGCGaaggguGGaCGCcgGCGCAgauCGCGCc -3'
miRNA:   3'- -UGuCCCGCCGU------UC-GCG--CGCGU---GCGCG- -5'
26616 3' -62.4 NC_005357.1 + 28623 0.7 0.142926
Target:  5'- gGCAGGa-GGCAcaGGCGCGCaaacugaccaGCaACGCGCa -3'
miRNA:   3'- -UGUCCcgCCGU--UCGCGCG----------CG-UGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 8674 0.7 0.146842
Target:  5'- uGCAGcGGCuGCugcgccgcccAGGUGUGCGC-CGCGCa -3'
miRNA:   3'- -UGUC-CCGcCG----------UUCGCGCGCGuGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 14852 0.7 0.146842
Target:  5'- ---uGGCGGCcAGCGC-CGCACGCuggGCg -3'
miRNA:   3'- ugucCCGCCGuUCGCGcGCGUGCG---CG- -5'
26616 3' -62.4 NC_005357.1 + 22526 0.7 0.146842
Target:  5'- cGCA--GCGaGCAcGCGCaGCGCGCGCGUg -3'
miRNA:   3'- -UGUccCGC-CGUuCGCG-CGCGUGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 19892 0.7 0.150855
Target:  5'- aACAc--CGGCAcGCGCGCGCuGCGCGUg -3'
miRNA:   3'- -UGUcccGCCGUuCGCGCGCG-UGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 36626 0.7 0.150855
Target:  5'- cCAGGGCGGCuucuaccccaAGGUcauCGaGCACGCGCu -3'
miRNA:   3'- uGUCCCGCCG----------UUCGc--GCgCGUGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 36854 0.7 0.154552
Target:  5'- cACGGuGGCGGCcAGCGUugGCGCcgucgauaccgugGCGgGCg -3'
miRNA:   3'- -UGUC-CCGCCGuUCGCG--CGCG-------------UGCgCG- -5'
26616 3' -62.4 NC_005357.1 + 13645 0.7 0.154967
Target:  5'- ---cGGCaaccagGGCAAGCGCGaCGCcguGCGCGCc -3'
miRNA:   3'- ugucCCG------CCGUUCGCGC-GCG---UGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 11407 0.7 0.159181
Target:  5'- cCAGGgucuugagcaGCGGCGAGCcgGCGUGCAgGuCGCc -3'
miRNA:   3'- uGUCC----------CGCCGUUCG--CGCGCGUgC-GCG- -5'
26616 3' -62.4 NC_005357.1 + 14219 0.7 0.165254
Target:  5'- cGCAGcGCGGCuuccuuggcgcgguuAAGUGCGuCGUccACGCGCa -3'
miRNA:   3'- -UGUCcCGCCG---------------UUCGCGC-GCG--UGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 39676 0.69 0.16792
Target:  5'- gGCAGuGGuCGGCAcgcccgagcAGCGcCGgGC-CGCGCu -3'
miRNA:   3'- -UGUC-CC-GCCGU---------UCGC-GCgCGuGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 17710 0.69 0.172449
Target:  5'- cCGGGaaaugcccaucGCGGCAAGCuGCGCGCAUuuggugGCGa -3'
miRNA:   3'- uGUCC-----------CGCCGUUCG-CGCGCGUG------CGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.