miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26616 3' -62.4 NC_005357.1 + 392 0.69 0.177087
Target:  5'- -gAGcGCGGCcAGCGCGCgacuguugagcaGCACGuCGCg -3'
miRNA:   3'- ugUCcCGCCGuUCGCGCG------------CGUGC-GCG- -5'
26616 3' -62.4 NC_005357.1 + 813 0.68 0.217752
Target:  5'- aGCA-GGUGGCugggcuuGAGCGCGCGCAgagacaGCGa -3'
miRNA:   3'- -UGUcCCGCCG-------UUCGCGCGCGUg-----CGCg -5'
26616 3' -62.4 NC_005357.1 + 1364 0.67 0.241856
Target:  5'- -aAGGGaUGGUgacauaGGGCGcCGCGgcCACGCGCa -3'
miRNA:   3'- ugUCCC-GCCG------UUCGC-GCGC--GUGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 1749 0.67 0.235779
Target:  5'- cACcGGGCGGUcauGGCcggccuGCGC-CugGCGCg -3'
miRNA:   3'- -UGuCCCGCCGu--UCG------CGCGcGugCGCG- -5'
26616 3' -62.4 NC_005357.1 + 2235 0.68 0.218315
Target:  5'- cGCAGcaGGCGGC--GCGUG-GC-CGCGCa -3'
miRNA:   3'- -UGUC--CCGCCGuuCGCGCgCGuGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 2406 0.82 0.019698
Target:  5'- uCAGGGCGGCAAGCGUagGUGUACG-GCa -3'
miRNA:   3'- uGUCCCGCCGUUCGCG--CGCGUGCgCG- -5'
26616 3' -62.4 NC_005357.1 + 2570 0.72 0.105769
Target:  5'- gACA---CGGCccAGCGCGUGCGCGCGCu -3'
miRNA:   3'- -UGUcccGCCGu-UCGCGCGCGUGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 4364 0.67 0.235779
Target:  5'- gGCcGGaCGGCAGGCGgaUGCGCAgccaggcgccguCGCGCc -3'
miRNA:   3'- -UGuCCcGCCGUUCGC--GCGCGU------------GCGCG- -5'
26616 3' -62.4 NC_005357.1 + 4512 0.67 0.248063
Target:  5'- --cGGGCGGCGcccgugaacguGGCGUgcuggGCGguCGUGCc -3'
miRNA:   3'- uguCCCGCCGU-----------UCGCG-----CGCguGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 4643 0.71 0.130674
Target:  5'- cGCAGGGuCGGCAAGaUcggacagguuguugGCGgGCACcaGCGCg -3'
miRNA:   3'- -UGUCCC-GCCGUUC-G--------------CGCgCGUG--CGCG- -5'
26616 3' -62.4 NC_005357.1 + 5094 0.67 0.260871
Target:  5'- aACA-GGCGGCcGGCccagcguccgGUGCgGCugGCGCc -3'
miRNA:   3'- -UGUcCCGCCGuUCG----------CGCG-CGugCGCG- -5'
26616 3' -62.4 NC_005357.1 + 5612 0.72 0.105769
Target:  5'- gGCGGGGUGcGUuucGCGCGUGgCGCgGCGCa -3'
miRNA:   3'- -UGUCCCGC-CGuu-CGCGCGC-GUG-CGCG- -5'
26616 3' -62.4 NC_005357.1 + 6622 0.66 0.274212
Target:  5'- aGCGGGcgcGUGGCGcuGCGCGCGgACaCGUa -3'
miRNA:   3'- -UGUCC---CGCCGUu-CGCGCGCgUGcGCG- -5'
26616 3' -62.4 NC_005357.1 + 7058 0.75 0.06353
Target:  5'- cCGGGGCGGCcagguacuucaugacGccgcggccuacccacGGCGCGCcCACGCGCa -3'
miRNA:   3'- uGUCCCGCCG---------------U---------------UCGCGCGcGUGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 7065 0.66 0.274212
Target:  5'- --cGGGCGGC-AGCGuCGUuugaacagGCugGCGg -3'
miRNA:   3'- uguCCCGCCGuUCGC-GCG--------CGugCGCg -5'
26616 3' -62.4 NC_005357.1 + 7414 0.69 0.183765
Target:  5'- gACAGGGUauaGaGC-AGCGgGCGCccggacacuuccucgACGCGCg -3'
miRNA:   3'- -UGUCCCG---C-CGuUCGCgCGCG---------------UGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 7830 0.67 0.254401
Target:  5'- -gAGGcGCGGCugcaCGaugaccagGCGCACGCGCu -3'
miRNA:   3'- ugUCC-CGCCGuuc-GCg-------CGCGUGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 7892 0.71 0.121378
Target:  5'- cCAGGGCGGC--GCGUGCGUAgauCGCcaGCu -3'
miRNA:   3'- uGUCCCGCCGuuCGCGCGCGU---GCG--CG- -5'
26616 3' -62.4 NC_005357.1 + 8143 0.68 0.22401
Target:  5'- --uGGGCGuGCGGGUgucgGCGCugcgucccuGCGCGUGCg -3'
miRNA:   3'- uguCCCGC-CGUUCG----CGCG---------CGUGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 8211 0.67 0.235779
Target:  5'- gACAuGGCGGCcAGUucGUGCGCGgcCGUGCc -3'
miRNA:   3'- -UGUcCCGCCGuUCG--CGCGCGU--GCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.