miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26616 3' -62.4 NC_005357.1 + 42246 0.67 0.247436
Target:  5'- gGCGGGGaugacgcCGGCAuucuGCGCGCgGCAgcuUGgGCa -3'
miRNA:   3'- -UGUCCC-------GCCGUu---CGCGCG-CGU---GCgCG- -5'
26616 3' -62.4 NC_005357.1 + 41027 0.67 0.241243
Target:  5'- -gGGGGCGGCcauGAGUGaaaccguUGUGCGCGUGg -3'
miRNA:   3'- ugUCCCGCCG---UUCGC-------GCGCGUGCGCg -5'
26616 3' -62.4 NC_005357.1 + 40057 0.73 0.09466
Target:  5'- cACGcGGGCGucugccacguGCAGGCcgaauuGCgGCGCACGCGCg -3'
miRNA:   3'- -UGU-CCCGC----------CGUUCG------CG-CGCGUGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 39846 1.1 0.000115
Target:  5'- aACAGGGCGGCAAGCGCGCGCACGCGCu -3'
miRNA:   3'- -UGUCCCGCCGUUCGCGCGCGUGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 39676 0.69 0.16792
Target:  5'- gGCAGuGGuCGGCAcgcccgagcAGCGcCGgGC-CGCGCu -3'
miRNA:   3'- -UGUC-CC-GCCGU---------UCGC-GCgCGuGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 38576 0.8 0.025556
Target:  5'- aGCuGGGCGGCGAG-GUGCGCAaagUGCGCu -3'
miRNA:   3'- -UGuCCCGCCGUUCgCGCGCGU---GCGCG- -5'
26616 3' -62.4 NC_005357.1 + 37079 0.67 0.260871
Target:  5'- uGCA-GGCGGCcacgcAGCGCgaugccaugcuGCGCcACGUGCu -3'
miRNA:   3'- -UGUcCCGCCGu----UCGCG-----------CGCG-UGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 36912 0.66 0.295241
Target:  5'- --uGGGCGGCcGGCGUGCcUACGacuuugGCa -3'
miRNA:   3'- uguCCCGCCGuUCGCGCGcGUGCg-----CG- -5'
26616 3' -62.4 NC_005357.1 + 36854 0.7 0.154552
Target:  5'- cACGGuGGCGGCcAGCGUugGCGCcgucgauaccgugGCGgGCg -3'
miRNA:   3'- -UGUC-CCGCCGuUCGCG--CGCG-------------UGCgCG- -5'
26616 3' -62.4 NC_005357.1 + 36626 0.7 0.150855
Target:  5'- cCAGGGCGGCuucuaccccaAGGUcauCGaGCACGCGCu -3'
miRNA:   3'- uGUCCCGCCG----------UUCGc--GCgCGUGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 35921 0.71 0.13538
Target:  5'- cGCAGGacacaacuaCGGCAAGCGCGUGaauGCGgGCc -3'
miRNA:   3'- -UGUCCc--------GCCGUUCGCGCGCg--UGCgCG- -5'
26616 3' -62.4 NC_005357.1 + 35314 0.68 0.212744
Target:  5'- cGCuGGGCaucacGCAGuccaucguGCGCGUGgGCGCGCc -3'
miRNA:   3'- -UGuCCCGc----CGUU--------CGCGCGCgUGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 35187 0.66 0.309945
Target:  5'- --uGGGCGGCcgacaucgccGAGgGUGaGCGCgGCGCa -3'
miRNA:   3'- uguCCCGCCG----------UUCgCGCgCGUG-CGCG- -5'
26616 3' -62.4 NC_005357.1 + 34700 0.69 0.177087
Target:  5'- cGCAGGaaUGGCAAGCG-GUGCAgGCGg -3'
miRNA:   3'- -UGUCCc-GCCGUUCGCgCGCGUgCGCg -5'
26616 3' -62.4 NC_005357.1 + 34640 0.7 0.139106
Target:  5'- uGCuGGGCGGCGaaggguGGaCGCcgGCGCAgauCGCGCc -3'
miRNA:   3'- -UGuCCCGCCGU------UC-GCG--CGCGU---GCGCG- -5'
26616 3' -62.4 NC_005357.1 + 34257 0.69 0.186695
Target:  5'- ---cGGCaGCAucCGgGCGCACGCGCa -3'
miRNA:   3'- ugucCCGcCGUucGCgCGCGUGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 34042 0.71 0.129609
Target:  5'- cACGuGGGCGGCGauucucgaagauucgAGCGCG-GCG-GCGCa -3'
miRNA:   3'- -UGU-CCCGCCGU---------------UCGCGCgCGUgCGCG- -5'
26616 3' -62.4 NC_005357.1 + 33751 0.66 0.309945
Target:  5'- cACAccuGGGCGGCGcagcAGC-CGCuGCACacagcgaguacgGCGCg -3'
miRNA:   3'- -UGU---CCCGCCGU----UCGcGCG-CGUG------------CGCG- -5'
26616 3' -62.4 NC_005357.1 + 33207 0.66 0.281086
Target:  5'- cGCcGGGCGcGCcgcaGAaCGUGCGC-CGCGCc -3'
miRNA:   3'- -UGuCCCGC-CG----UUcGCGCGCGuGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 33029 0.77 0.044132
Target:  5'- uGCuGGGCGGCAAGUgcaaguucccGCGUGCuguCGUGCg -3'
miRNA:   3'- -UGuCCCGCCGUUCG----------CGCGCGu--GCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.