miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26616 3' -62.4 NC_005357.1 + 7414 0.69 0.183765
Target:  5'- gACAGGGUauaGaGC-AGCGgGCGCccggacacuuccucgACGCGCg -3'
miRNA:   3'- -UGUCCCG---C-CGuUCGCgCGCG---------------UGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 24075 0.7 0.139106
Target:  5'- cACAGuaGCGGCGAcCGCGCgggGCACGgGCa -3'
miRNA:   3'- -UGUCc-CGCCGUUcGCGCG---CGUGCgCG- -5'
26616 3' -62.4 NC_005357.1 + 22526 0.7 0.146842
Target:  5'- cGCA--GCGaGCAcGCGCaGCGCGCGCGUg -3'
miRNA:   3'- -UGUccCGC-CGUuCGCG-CGCGUGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 14852 0.7 0.146842
Target:  5'- ---uGGCGGCcAGCGC-CGCACGCuggGCg -3'
miRNA:   3'- ugucCCGCCGuUCGCGcGCGUGCG---CG- -5'
26616 3' -62.4 NC_005357.1 + 11407 0.7 0.159181
Target:  5'- cCAGGgucuugagcaGCGGCGAGCcgGCGUGCAgGuCGCc -3'
miRNA:   3'- uGUCC----------CGCCGUUCG--CGCGCGUgC-GCG- -5'
26616 3' -62.4 NC_005357.1 + 14219 0.7 0.165254
Target:  5'- cGCAGcGCGGCuuccuuggcgcgguuAAGUGCGuCGUccACGCGCa -3'
miRNA:   3'- -UGUCcCGCCG---------------UUCGCGC-GCG--UGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 39676 0.69 0.16792
Target:  5'- gGCAGuGGuCGGCAcgcccgagcAGCGcCGgGC-CGCGCu -3'
miRNA:   3'- -UGUC-CC-GCCGU---------UCGC-GCgCGuGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 17710 0.69 0.172449
Target:  5'- cCGGGaaaugcccaucGCGGCAAGCuGCGCGCAUuuggugGCGa -3'
miRNA:   3'- uGUCC-----------CGCCGUUCG-CGCGCGUG------CGCg -5'
26616 3' -62.4 NC_005357.1 + 17765 0.69 0.177087
Target:  5'- uGCAGuucgaGCaGCGAGuCGCGCGCgaacggauagaaGCGCGCg -3'
miRNA:   3'- -UGUCc----CGcCGUUC-GCGCGCG------------UGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 35921 0.71 0.13538
Target:  5'- cGCAGGacacaacuaCGGCAAGCGCGUGaauGCGgGCc -3'
miRNA:   3'- -UGUCCc--------GCCGUUCGCGCGCg--UGCgCG- -5'
26616 3' -62.4 NC_005357.1 + 4643 0.71 0.130674
Target:  5'- cGCAGGGuCGGCAAGaUcggacagguuguugGCGgGCACcaGCGCg -3'
miRNA:   3'- -UGUCCC-GCCGUUC-G--------------CGCgCGUG--CGCG- -5'
26616 3' -62.4 NC_005357.1 + 34042 0.71 0.129609
Target:  5'- cACGuGGGCGGCGauucucgaagauucgAGCGCG-GCG-GCGCa -3'
miRNA:   3'- -UGU-CCCGCCGU---------------UCGCGCgCGUgCGCG- -5'
26616 3' -62.4 NC_005357.1 + 2406 0.82 0.019698
Target:  5'- uCAGGGCGGCAAGCGUagGUGUACG-GCa -3'
miRNA:   3'- uGUCCCGCCGUUCGCG--CGCGUGCgCG- -5'
26616 3' -62.4 NC_005357.1 + 38576 0.8 0.025556
Target:  5'- aGCuGGGCGGCGAG-GUGCGCAaagUGCGCu -3'
miRNA:   3'- -UGuCCCGCCGUUCgCGCGCGU---GCGCG- -5'
26616 3' -62.4 NC_005357.1 + 33029 0.77 0.044132
Target:  5'- uGCuGGGCGGCAAGUgcaaguucccGCGUGCuguCGUGCg -3'
miRNA:   3'- -UGuCCCGCCGUUCG----------CGCGCGu--GCGCG- -5'
26616 3' -62.4 NC_005357.1 + 25767 0.76 0.052375
Target:  5'- uGCuGGGCGGCGgcaacgauGGCcgcgauGCGCGCGgCGCGCu -3'
miRNA:   3'- -UGuCCCGCCGU--------UCG------CGCGCGU-GCGCG- -5'
26616 3' -62.4 NC_005357.1 + 7058 0.75 0.06353
Target:  5'- cCGGGGCGGCcagguacuucaugacGccgcggccuacccacGGCGCGCcCACGCGCa -3'
miRNA:   3'- uGUCCCGCCG---------------U---------------UCGCGCGcGUGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 26046 0.74 0.073576
Target:  5'- aGCccGcGCGGCGGGCGCGCucCAUGCGCu -3'
miRNA:   3'- -UGucC-CGCCGUUCGCGCGc-GUGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 12125 0.73 0.084662
Target:  5'- gGCAGGuuGGCGcGaCGCGC-CACGCGCu -3'
miRNA:   3'- -UGUCCcgCCGUuC-GCGCGcGUGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 8663 0.72 0.114892
Target:  5'- cGCGcGGuCGGCAuuGCGUGC-CGCGCGCa -3'
miRNA:   3'- -UGUcCC-GCCGUu-CGCGCGcGUGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.