miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26616 3' -62.4 NC_005357.1 + 14593 0.74 0.075676
Target:  5'- aGCGGcGCGGCcGGCGCcaccgcggGCaGCGCGCGCg -3'
miRNA:   3'- -UGUCcCGCCGuUCGCG--------CG-CGUGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 36626 0.7 0.150855
Target:  5'- cCAGGGCGGCuucuaccccaAGGUcauCGaGCACGCGCu -3'
miRNA:   3'- uGUCCCGCCG----------UUCGc--GCgCGUGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 36854 0.7 0.154552
Target:  5'- cACGGuGGCGGCcAGCGUugGCGCcgucgauaccgugGCGgGCg -3'
miRNA:   3'- -UGUC-CCGCCGuUCGCG--CGCG-------------UGCgCG- -5'
26616 3' -62.4 NC_005357.1 + 35187 0.66 0.309945
Target:  5'- --uGGGCGGCcgacaucgccGAGgGUGaGCGCgGCGCa -3'
miRNA:   3'- uguCCCGCCG----------UUCgCGCgCGUG-CGCG- -5'
26616 3' -62.4 NC_005357.1 + 12993 0.73 0.09466
Target:  5'- aGCAccuGGGCGcgacguGCGAGCGCGUGggcaACGCGCc -3'
miRNA:   3'- -UGU---CCCGC------CGUUCGCGCGCg---UGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 40057 0.73 0.09466
Target:  5'- cACGcGGGCGucugccacguGCAGGCcgaauuGCgGCGCACGCGCg -3'
miRNA:   3'- -UGU-CCCGC----------CGUUCG------CG-CGCGUGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 14724 0.72 0.102882
Target:  5'- ---cGGCGGCGAGC-CGCuGCcgGCGCGCg -3'
miRNA:   3'- ugucCCGCCGUUCGcGCG-CG--UGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 2570 0.72 0.105769
Target:  5'- gACA---CGGCccAGCGCGUGCGCGCGCu -3'
miRNA:   3'- -UGUcccGCCGu-UCGCGCGCGUGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 12300 0.71 0.118094
Target:  5'- uGCAGGcCGGC-GGCGUGUuCugGCGCg -3'
miRNA:   3'- -UGUCCcGCCGuUCGCGCGcGugCGCG- -5'
26616 3' -62.4 NC_005357.1 + 8674 0.7 0.146842
Target:  5'- uGCAGcGGCuGCugcgccgcccAGGUGUGCGC-CGCGCa -3'
miRNA:   3'- -UGUC-CCGcCG----------UUCGCGCGCGuGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 14629 0.71 0.135013
Target:  5'- -gAGGacgugcuGCGGCu-GCGCG-GCGCGCGCu -3'
miRNA:   3'- ugUCC-------CGCCGuuCGCGCgCGUGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 14993 0.72 0.114892
Target:  5'- cCAGGGCcugcGGCcgccGGGCGCgguGCGCcagGCGCGCg -3'
miRNA:   3'- uGUCCCG----CCG----UUCGCG---CGCG---UGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 24274 0.74 0.080048
Target:  5'- aACAGGGCuauuucGGCAAGCuGCGCGagcCGgGCg -3'
miRNA:   3'- -UGUCCCG------CCGUUCG-CGCGCgu-GCgCG- -5'
26616 3' -62.4 NC_005357.1 + 34640 0.7 0.139106
Target:  5'- uGCuGGGCGGCGaaggguGGaCGCcgGCGCAgauCGCGCc -3'
miRNA:   3'- -UGuCCCGCCGU------UC-GCG--CGCGU---GCGCG- -5'
26616 3' -62.4 NC_005357.1 + 16173 0.73 0.089528
Target:  5'- cCAGGcCGGCGGGUGCccgugccuucgGCGaCGCGCGCa -3'
miRNA:   3'- uGUCCcGCCGUUCGCG-----------CGC-GUGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 5612 0.72 0.105769
Target:  5'- gGCGGGGUGcGUuucGCGCGUGgCGCgGCGCa -3'
miRNA:   3'- -UGUCCCGC-CGuu-CGCGCGC-GUG-CGCG- -5'
26616 3' -62.4 NC_005357.1 + 28623 0.7 0.142926
Target:  5'- gGCAGGa-GGCAcaGGCGCGCaaacugaccaGCaACGCGCa -3'
miRNA:   3'- -UGUCCcgCCGU--UCGCGCG----------CG-UGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 19892 0.7 0.150855
Target:  5'- aACAc--CGGCAcGCGCGCGCuGCGCGUg -3'
miRNA:   3'- -UGUcccGCCGUuCGCGCGCG-UGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 32417 0.73 0.09206
Target:  5'- cCAGGGCGGgGGcCGgGCGCGCG-GCa -3'
miRNA:   3'- uGUCCCGCCgUUcGCgCGCGUGCgCG- -5'
26616 3' -62.4 NC_005357.1 + 24628 0.72 0.100069
Target:  5'- uGCA-GGCGGaauacuGCGCGCGCuucuauccguucGCGCGCg -3'
miRNA:   3'- -UGUcCCGCCguu---CGCGCGCG------------UGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.