miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26616 3' -62.4 NC_005357.1 + 392 0.69 0.177087
Target:  5'- -gAGcGCGGCcAGCGCGCgacuguugagcaGCACGuCGCg -3'
miRNA:   3'- ugUCcCGCCGuUCGCGCG------------CGUGC-GCG- -5'
26616 3' -62.4 NC_005357.1 + 36854 0.7 0.154552
Target:  5'- cACGGuGGCGGCcAGCGUugGCGCcgucgauaccgugGCGgGCg -3'
miRNA:   3'- -UGUC-CCGCCGuUCGCG--CGCG-------------UGCgCG- -5'
26616 3' -62.4 NC_005357.1 + 14993 0.72 0.114892
Target:  5'- cCAGGGCcugcGGCcgccGGGCGCgguGCGCcagGCGCGCg -3'
miRNA:   3'- uGUCCCG----CCG----UUCGCG---CGCG---UGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 32417 0.73 0.09206
Target:  5'- cCAGGGCGGgGGcCGgGCGCGCG-GCa -3'
miRNA:   3'- uGUCCCGCCgUUcGCgCGCGUGCgCG- -5'
26616 3' -62.4 NC_005357.1 + 1364 0.67 0.241856
Target:  5'- -aAGGGaUGGUgacauaGGGCGcCGCGgcCACGCGCa -3'
miRNA:   3'- ugUCCC-GCCG------UUCGC-GCGC--GUGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 16613 0.68 0.195221
Target:  5'- aACGGcGGCccgguGCAgaucaacgauaccgAGCGCGC-CGCGCGCa -3'
miRNA:   3'- -UGUC-CCGc----CGU--------------UCGCGCGcGUGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 36626 0.7 0.150855
Target:  5'- cCAGGGCGGCuucuaccccaAGGUcauCGaGCACGCGCu -3'
miRNA:   3'- uGUCCCGCCG----------UUCGc--GCgCGUGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 16173 0.73 0.089528
Target:  5'- cCAGGcCGGCGGGUGCccgugccuucgGCGaCGCGCGCa -3'
miRNA:   3'- uGUCCcGCCGUUCGCG-----------CGC-GUGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 27309 0.69 0.19167
Target:  5'- cAUGGGGUcgggccugguaGGCAgcuauuacGGCGCGCGguCGCaGCa -3'
miRNA:   3'- -UGUCCCG-----------CCGU--------UCGCGCGCguGCG-CG- -5'
26616 3' -62.4 NC_005357.1 + 24274 0.74 0.080048
Target:  5'- aACAGGGCuauuucGGCAAGCuGCGCGagcCGgGCg -3'
miRNA:   3'- -UGUCCCG------CCGUUCG-CGCGCgu-GCgCG- -5'
26616 3' -62.4 NC_005357.1 + 19892 0.7 0.150855
Target:  5'- aACAc--CGGCAcGCGCGCGCuGCGCGUg -3'
miRNA:   3'- -UGUcccGCCGUuCGCGCGCG-UGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 34700 0.69 0.177087
Target:  5'- cGCAGGaaUGGCAAGCG-GUGCAgGCGg -3'
miRNA:   3'- -UGUCCc-GCCGUUCGCgCGCGUgCGCg -5'
26616 3' -62.4 NC_005357.1 + 34640 0.7 0.139106
Target:  5'- uGCuGGGCGGCGaaggguGGaCGCcgGCGCAgauCGCGCc -3'
miRNA:   3'- -UGuCCCGCCGU------UC-GCG--CGCGU---GCGCG- -5'
26616 3' -62.4 NC_005357.1 + 12300 0.71 0.118094
Target:  5'- uGCAGGcCGGC-GGCGUGUuCugGCGCg -3'
miRNA:   3'- -UGUCCcGCCGuUCGCGCGcGugCGCG- -5'
26616 3' -62.4 NC_005357.1 + 14724 0.72 0.102882
Target:  5'- ---cGGCGGCGAGC-CGCuGCcgGCGCGCg -3'
miRNA:   3'- ugucCCGCCGUUCGcGCG-CG--UGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 12993 0.73 0.09466
Target:  5'- aGCAccuGGGCGcgacguGCGAGCGCGUGggcaACGCGCc -3'
miRNA:   3'- -UGU---CCCGC------CGUUCGCGCGCg---UGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 28098 0.67 0.260871
Target:  5'- aGCAGGccCGGCAguucagccaaGGCGCGCGCcaguucagcaACGaCGUg -3'
miRNA:   3'- -UGUCCc-GCCGU----------UCGCGCGCG----------UGC-GCG- -5'
26616 3' -62.4 NC_005357.1 + 7830 0.67 0.254401
Target:  5'- -gAGGcGCGGCugcaCGaugaccagGCGCACGCGCu -3'
miRNA:   3'- ugUCC-CGCCGuuc-GCg-------CGCGUGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 4364 0.67 0.235779
Target:  5'- gGCcGGaCGGCAGGCGgaUGCGCAgccaggcgccguCGCGCc -3'
miRNA:   3'- -UGuCCcGCCGUUCGC--GCGCGU------------GCGCG- -5'
26616 3' -62.4 NC_005357.1 + 28004 0.68 0.207295
Target:  5'- aACAcGGuGCcGCAGGCGCGC-CugGCGa -3'
miRNA:   3'- -UGU-CC-CGcCGUUCGCGCGcGugCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.