miRNA display CGI


Results 41 - 60 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26616 3' -62.4 NC_005357.1 + 25000 0.66 0.295241
Target:  5'- gGCGGGGCcacugcucaagGGCGA-CGUGgGCGC-CGCu -3'
miRNA:   3'- -UGUCCCG-----------CCGUUcGCGCgCGUGcGCG- -5'
26616 3' -62.4 NC_005357.1 + 8674 0.7 0.146842
Target:  5'- uGCAGcGGCuGCugcgccgcccAGGUGUGCGC-CGCGCa -3'
miRNA:   3'- -UGUC-CCGcCG----------UUCGCGCGCGuGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 392 0.69 0.177087
Target:  5'- -gAGcGCGGCcAGCGCGCgacuguugagcaGCACGuCGCg -3'
miRNA:   3'- ugUCcCGCCGuUCGCGCG------------CGUGC-GCG- -5'
26616 3' -62.4 NC_005357.1 + 27309 0.69 0.19167
Target:  5'- cAUGGGGUcgggccugguaGGCAgcuauuacGGCGCGCGguCGCaGCa -3'
miRNA:   3'- -UGUCCCG-----------CCGU--------UCGCGCGCguGCG-CG- -5'
26616 3' -62.4 NC_005357.1 + 35314 0.68 0.212744
Target:  5'- cGCuGGGCaucacGCAGuccaucguGCGCGUGgGCGCGCc -3'
miRNA:   3'- -UGuCCCGc----CGUU--------CGCGCGCgUGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 15604 0.66 0.302525
Target:  5'- uCGGGGCGGCGcAGCcUGCcaaaaacaGCACGCc- -3'
miRNA:   3'- uGUCCCGCCGU-UCGcGCG--------CGUGCGcg -5'
26616 3' -62.4 NC_005357.1 + 10332 0.66 0.281086
Target:  5'- cCAGGGCGuugaGCAAcGCGgcCGUGUugGCGg -3'
miRNA:   3'- uGUCCCGC----CGUU-CGC--GCGCGugCGCg -5'
26616 3' -62.4 NC_005357.1 + 7065 0.66 0.274212
Target:  5'- --cGGGCGGC-AGCGuCGUuugaacagGCugGCGg -3'
miRNA:   3'- uguCCCGCCGuUCGC-GCG--------CGugCGCg -5'
26616 3' -62.4 NC_005357.1 + 5094 0.67 0.260871
Target:  5'- aACA-GGCGGCcGGCccagcguccgGUGCgGCugGCGCc -3'
miRNA:   3'- -UGUcCCGCCGuUCG----------CGCG-CGugCGCG- -5'
26616 3' -62.4 NC_005357.1 + 1364 0.67 0.241856
Target:  5'- -aAGGGaUGGUgacauaGGGCGcCGCGgcCACGCGCa -3'
miRNA:   3'- ugUCCC-GCCG------UUCGC-GCGC--GUGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 35187 0.66 0.309945
Target:  5'- --uGGGCGGCcgacaucgccGAGgGUGaGCGCgGCGCa -3'
miRNA:   3'- uguCCCGCCG----------UUCgCGCgCGUG-CGCG- -5'
26616 3' -62.4 NC_005357.1 + 9977 0.68 0.223435
Target:  5'- aGCAGGaaaCGGUGAGCGUggcggggucgaaaGUGC-CGCGCg -3'
miRNA:   3'- -UGUCCc--GCCGUUCGCG-------------CGCGuGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 8143 0.68 0.22401
Target:  5'- --uGGGCGuGCGGGUgucgGCGCugcgucccuGCGCGUGCg -3'
miRNA:   3'- uguCCCGC-CGUUCG----CGCG---------CGUGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 25070 0.67 0.229831
Target:  5'- --cGGGCaGCAucgccacccAGCGCaGCGCGCccgGCGCc -3'
miRNA:   3'- uguCCCGcCGU---------UCGCG-CGCGUG---CGCG- -5'
26616 3' -62.4 NC_005357.1 + 2235 0.68 0.218315
Target:  5'- cGCAGcaGGCGGC--GCGUG-GC-CGCGCa -3'
miRNA:   3'- -UGUC--CCGCCGuuCGCGCgCGuGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 26046 0.74 0.073576
Target:  5'- aGCccGcGCGGCGGGCGCGCucCAUGCGCu -3'
miRNA:   3'- -UGucC-CGCCGUUCGCGCGc-GUGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 41027 0.67 0.241243
Target:  5'- -gGGGGCGGCcauGAGUGaaaccguUGUGCGCGUGg -3'
miRNA:   3'- ugUCCCGCCG---UUCGC-------GCGCGUGCGCg -5'
26616 3' -62.4 NC_005357.1 + 24075 0.7 0.139106
Target:  5'- cACAGuaGCGGCGAcCGCGCgggGCACGgGCa -3'
miRNA:   3'- -UGUCc-CGCCGUUcGCGCG---CGUGCgCG- -5'
26616 3' -62.4 NC_005357.1 + 22526 0.7 0.146842
Target:  5'- cGCA--GCGaGCAcGCGCaGCGCGCGCGUg -3'
miRNA:   3'- -UGUccCGC-CGUuCGCG-CGCGUGCGCG- -5'
26616 3' -62.4 NC_005357.1 + 14852 0.7 0.146842
Target:  5'- ---uGGCGGCcAGCGC-CGCACGCuggGCg -3'
miRNA:   3'- ugucCCGCCGuUCGCGcGCGUGCG---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.