Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26617 | 3' | -55 | NC_005357.1 | + | 10503 | 0.74 | 0.256825 |
Target: 5'- gCGUGUCGagcaGCGCCUCGAaacGCCGcagGCa -3' miRNA: 3'- gGUACGGCa---CGCGGAGCU---UGGCaa-CG- -5' |
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26617 | 3' | -55 | NC_005357.1 | + | 34661 | 0.66 | 0.685843 |
Target: 5'- ---cGCCG-GCGCagaUCGcGCCGgUGCu -3' miRNA: 3'- gguaCGGCaCGCGg--AGCuUGGCaACG- -5' |
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26617 | 3' | -55 | NC_005357.1 | + | 9580 | 0.66 | 0.696817 |
Target: 5'- ---cGCCGaccgucUGCgGCCaggCGaAGCCGUUGCg -3' miRNA: 3'- gguaCGGC------ACG-CGGa--GC-UUGGCAACG- -5' |
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26617 | 3' | -55 | NC_005357.1 | + | 7534 | 0.65 | 0.707728 |
Target: 5'- aCCGUGCgcuCGgcgGCGUgCUCGAuCCGcgGCg -3' miRNA: 3'- -GGUACG---GCa--CGCG-GAGCUuGGCaaCG- -5' |
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26617 | 3' | -55 | NC_005357.1 | + | 8024 | 0.68 | 0.586009 |
Target: 5'- gCCAgcuucGCCgGUGacaGCCUCGAcgcucaACCGcUGCu -3' miRNA: 3'- -GGUa----CGG-CACg--CGGAGCU------UGGCaACG- -5' |
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26617 | 3' | -55 | NC_005357.1 | + | 9033 | 0.68 | 0.586009 |
Target: 5'- gCCGUGCCGcGauaGCCagCGGugGCCGUgccGCg -3' miRNA: 3'- -GGUACGGCaCg--CGGa-GCU--UGGCAa--CG- -5' |
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26617 | 3' | -55 | NC_005357.1 | + | 9129 | 0.68 | 0.586009 |
Target: 5'- gCCGUGCCGcGauaGCCagCGGugGCCGUgccGCg -3' miRNA: 3'- -GGUACGGCaCg--CGGa-GCU--UGGCAa--CG- -5' |
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26617 | 3' | -55 | NC_005357.1 | + | 9177 | 0.68 | 0.586009 |
Target: 5'- gCCGUGCCGcGauaGCCagCGGugGCCGUgccGCg -3' miRNA: 3'- -GGUACGGCaCg--CGGa-GCU--UGGCAa--CG- -5' |
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26617 | 3' | -55 | NC_005357.1 | + | 14716 | 0.67 | 0.64153 |
Target: 5'- uCCAUGaCCG-GCGg--CGAGCCGcUGCc -3' miRNA: 3'- -GGUAC-GGCaCGCggaGCUUGGCaACG- -5' |
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26617 | 3' | -55 | NC_005357.1 | + | 19004 | 0.66 | 0.685843 |
Target: 5'- uCCcgGCCG-GCGUCgcaCuGACCGgcGCg -3' miRNA: 3'- -GGuaCGGCaCGCGGa--GcUUGGCaaCG- -5' |
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26617 | 3' | -55 | NC_005357.1 | + | 22978 | 0.66 | 0.652648 |
Target: 5'- aCUAUGgCGUGCaGCC-CGAgaagucccgcACCGU-GCa -3' miRNA: 3'- -GGUACgGCACG-CGGaGCU----------UGGCAaCG- -5' |
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26617 | 3' | -55 | NC_005357.1 | + | 23714 | 0.67 | 0.608164 |
Target: 5'- cCCGUGCCGccguaccgaUGCGCUgcugCuGACCGagGCc -3' miRNA: 3'- -GGUACGGC---------ACGCGGa---GcUUGGCaaCG- -5' |
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26617 | 3' | -55 | NC_005357.1 | + | 8938 | 0.7 | 0.438668 |
Target: 5'- gCCGUGCCGgauuCGCCagCGGugGCCGUgccGCg -3' miRNA: 3'- -GGUACGGCac--GCGGa-GCU--UGGCAa--CG- -5' |
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26617 | 3' | -55 | NC_005357.1 | + | 9225 | 0.66 | 0.663747 |
Target: 5'- gCCGUGCCGcGauaGCCagCGGugGCCGU-GCc -3' miRNA: 3'- -GGUACGGCaCg--CGGa-GCU--UGGCAaCG- -5' |
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26617 | 3' | -55 | NC_005357.1 | + | 8985 | 0.7 | 0.438668 |
Target: 5'- gCCGUGCCGgauuCGCCagCGGugGCCGUgccGCg -3' miRNA: 3'- -GGUACGGCac--GCGGa-GCU--UGGCAa--CG- -5' |
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26617 | 3' | -55 | NC_005357.1 | + | 26653 | 0.67 | 0.608164 |
Target: 5'- uCUAUGCCGUcGUGCgUCGcACCauugGCg -3' miRNA: 3'- -GGUACGGCA-CGCGgAGCuUGGcaa-CG- -5' |
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26617 | 3' | -55 | NC_005357.1 | + | 41748 | 0.66 | 0.674815 |
Target: 5'- gCCcgGCCG-GCGCC----GCCGUagGCg -3' miRNA: 3'- -GGuaCGGCaCGCGGagcuUGGCAa-CG- -5' |
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26617 | 3' | -55 | NC_005357.1 | + | 1758 | 0.66 | 0.692434 |
Target: 5'- gUCAUgGCCGgccUGCGCCuggcgcgUCGGGCCGauacguucgaugauUUGCu -3' miRNA: 3'- -GGUA-CGGC---ACGCGG-------AGCUUGGC--------------AACG- -5' |
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26617 | 3' | -55 | NC_005357.1 | + | 38167 | 0.68 | 0.553093 |
Target: 5'- aCCAUGCCG-GCGCUgacGGCCG--GCa -3' miRNA: 3'- -GGUACGGCaCGCGGagcUUGGCaaCG- -5' |
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26617 | 3' | -55 | NC_005357.1 | + | 9081 | 0.68 | 0.586009 |
Target: 5'- gCCGUGCCGcGauaGCCagCGGugGCCGUgccGCg -3' miRNA: 3'- -GGUACGGCaCg--CGGa-GCU--UGGCAa--CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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