miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26617 3' -55 NC_005357.1 + 21852 0.67 0.64153
Target:  5'- ---gGCC-UGCGCCUUGcGCaGUUGCu -3'
miRNA:   3'- gguaCGGcACGCGGAGCuUGgCAACG- -5'
26617 3' -55 NC_005357.1 + 4262 0.67 0.619278
Target:  5'- gCcgGCCGUcaGCGCCggcauggUGAugGCCGUgucgGCg -3'
miRNA:   3'- gGuaCGGCA--CGCGGa------GCU--UGGCAa---CG- -5'
26617 3' -55 NC_005357.1 + 1708 0.67 0.619278
Target:  5'- ---cGCCGUGgGCCggCGuGCCGgcgaggGCg -3'
miRNA:   3'- gguaCGGCACgCGGa-GCuUGGCaa----CG- -5'
26617 3' -55 NC_005357.1 + 8168 0.67 0.608164
Target:  5'- uCCcUGCgCGUGCGCC-CGGauGCUGccgGCg -3'
miRNA:   3'- -GGuACG-GCACGCGGaGCU--UGGCaa-CG- -5'
26617 3' -55 NC_005357.1 + 23714 0.67 0.608164
Target:  5'- cCCGUGCCGccguaccgaUGCGCUgcugCuGACCGagGCc -3'
miRNA:   3'- -GGUACGGC---------ACGCGGa---GcUUGGCaaCG- -5'
26617 3' -55 NC_005357.1 + 26653 0.67 0.608164
Target:  5'- uCUAUGCCGUcGUGCgUCGcACCauugGCg -3'
miRNA:   3'- -GGUACGGCA-CGCGgAGCuUGGcaa-CG- -5'
26617 3' -55 NC_005357.1 + 40162 0.67 0.607053
Target:  5'- cCCAUcgucaacGUgGUGCGCgUCGAACUGccgGCc -3'
miRNA:   3'- -GGUA-------CGgCACGCGgAGCUUGGCaa-CG- -5'
26617 3' -55 NC_005357.1 + 23013 0.67 0.597071
Target:  5'- gCC-UGCUGcUGCGCCUgcuguUGGGCUuGUUGCu -3'
miRNA:   3'- -GGuACGGC-ACGCGGA-----GCUUGG-CAACG- -5'
26617 3' -55 NC_005357.1 + 19875 0.67 0.597071
Target:  5'- gCGUGCCGaaggcgucgcGCGCCUUcuuGGCCGUgGCa -3'
miRNA:   3'- gGUACGGCa---------CGCGGAGc--UUGGCAaCG- -5'
26617 3' -55 NC_005357.1 + 3727 0.67 0.597071
Target:  5'- cCCGUGCCGUucaCGCCgguggUGGGCaCGUcggUGCc -3'
miRNA:   3'- -GGUACGGCAc--GCGGa----GCUUG-GCA---ACG- -5'
26617 3' -55 NC_005357.1 + 9177 0.68 0.586009
Target:  5'- gCCGUGCCGcGauaGCCagCGGugGCCGUgccGCg -3'
miRNA:   3'- -GGUACGGCaCg--CGGa-GCU--UGGCAa--CG- -5'
26617 3' -55 NC_005357.1 + 9129 0.68 0.586009
Target:  5'- gCCGUGCCGcGauaGCCagCGGugGCCGUgccGCg -3'
miRNA:   3'- -GGUACGGCaCg--CGGa-GCU--UGGCAa--CG- -5'
26617 3' -55 NC_005357.1 + 9081 0.68 0.586009
Target:  5'- gCCGUGCCGcGauaGCCagCGGugGCCGUgccGCg -3'
miRNA:   3'- -GGUACGGCaCg--CGGa-GCU--UGGCAa--CG- -5'
26617 3' -55 NC_005357.1 + 8024 0.68 0.586009
Target:  5'- gCCAgcuucGCCgGUGacaGCCUCGAcgcucaACCGcUGCu -3'
miRNA:   3'- -GGUa----CGG-CACg--CGGAGCU------UGGCaACG- -5'
26617 3' -55 NC_005357.1 + 9033 0.68 0.586009
Target:  5'- gCCGUGCCGcGauaGCCagCGGugGCCGUgccGCg -3'
miRNA:   3'- -GGUACGGCaCg--CGGa-GCU--UGGCAa--CG- -5'
26617 3' -55 NC_005357.1 + 13383 0.68 0.574986
Target:  5'- gCCAUGCCcaGCGCgCgguuguaggCGGcAUCGUUGCg -3'
miRNA:   3'- -GGUACGGcaCGCG-Ga--------GCU-UGGCAACG- -5'
26617 3' -55 NC_005357.1 + 31514 0.68 0.564011
Target:  5'- gCGUGCUGcUGgGCCUCGcugUGUUGCc -3'
miRNA:   3'- gGUACGGC-ACgCGGAGCuugGCAACG- -5'
26617 3' -55 NC_005357.1 + 38167 0.68 0.553093
Target:  5'- aCCAUGCCG-GCGCUgacGGCCG--GCa -3'
miRNA:   3'- -GGUACGGCaCGCGGagcUUGGCaaCG- -5'
26617 3' -55 NC_005357.1 + 20739 0.68 0.531455
Target:  5'- aCAUGCUGcugGCGCCguaGAGgCGcUGCg -3'
miRNA:   3'- gGUACGGCa--CGCGGag-CUUgGCaACG- -5'
26617 3' -55 NC_005357.1 + 4311 0.69 0.506964
Target:  5'- aCCAgcuUGCCGUugaccuccacgaugGUgccaGCCUUGAugcugGCCGUUGCg -3'
miRNA:   3'- -GGU---ACGGCA--------------CG----CGGAGCU-----UGGCAACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.