Results 1 - 20 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26620 | 5' | -53.9 | NC_005357.1 | + | 41337 | 1.11 | 0.000673 |
Target: 5'- cUACCGCCGCCAACAUGAAGUACGCGCg -3' miRNA: 3'- -AUGGCGGCGGUUGUACUUCAUGCGCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 27298 | 0.86 | 0.040541 |
Target: 5'- -uCCGCCGCCAGCAUGggGU-CGgGCc -3' miRNA: 3'- auGGCGGCGGUUGUACuuCAuGCgCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 22332 | 0.76 | 0.214812 |
Target: 5'- gUGCCGaacgCGCCGaguucuucguACAUGGAGUGCaGCGCg -3' miRNA: 3'- -AUGGCg---GCGGU----------UGUACUUCAUG-CGCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 14385 | 0.75 | 0.239459 |
Target: 5'- gACCGUCGCCGACGUGuucuucgGCGaCGCc -3' miRNA: 3'- aUGGCGGCGGUUGUACuuca---UGC-GCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 8751 | 0.75 | 0.239459 |
Target: 5'- cGCUaCCGUCAACAUGGAauuUGCGCGCg -3' miRNA: 3'- aUGGcGGCGGUUGUACUUc--AUGCGCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 31332 | 0.74 | 0.259461 |
Target: 5'- gGCCGCaGCCGACA--AGGUgcucGCGCGCg -3' miRNA: 3'- aUGGCGgCGGUUGUacUUCA----UGCGCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 6626 | 0.74 | 0.271389 |
Target: 5'- -uCCGCCGCCAGCuucgcgcgcuuggccGGAGUGucCGCGCu -3' miRNA: 3'- auGGCGGCGGUUGua-------------CUUCAU--GCGCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 20004 | 0.73 | 0.311399 |
Target: 5'- cGCCGCCGUCAagGCGUGGcuGGcgaacgucACGCGCu -3' miRNA: 3'- aUGGCGGCGGU--UGUACU--UCa-------UGCGCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 803 | 0.73 | 0.319434 |
Target: 5'- aAUCGCCGUCAGCAggUGGcugggcuugAGcGCGCGCa -3' miRNA: 3'- aUGGCGGCGGUUGU--ACU---------UCaUGCGCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 34212 | 0.72 | 0.335965 |
Target: 5'- gGCCGCCGaCCAGCGcGAcuacgAGgcCGUGCg -3' miRNA: 3'- aUGGCGGC-GGUUGUaCU-----UCauGCGCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 16671 | 0.72 | 0.344462 |
Target: 5'- uUGCCGCCGcCCAGCA------GCGCGCc -3' miRNA: 3'- -AUGGCGGC-GGUUGUacuucaUGCGCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 14943 | 0.72 | 0.353112 |
Target: 5'- gGCCGCCGgCAuccucGCGUGGugcguGgcgGCGCGCu -3' miRNA: 3'- aUGGCGGCgGU-----UGUACUu----Ca--UGCGCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 28554 | 0.72 | 0.367269 |
Target: 5'- uUGCgGCCGCCGGCcaucgcgGCGCGCa -3' miRNA: 3'- -AUGgCGGCGGUUGuacuucaUGCGCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 33099 | 0.72 | 0.370869 |
Target: 5'- aUGCCGCCGCCcgccGCGccGAcGUGCGcCGCc -3' miRNA: 3'- -AUGGCGGCGGu---UGUa-CUuCAUGC-GCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 33201 | 0.72 | 0.370869 |
Target: 5'- aACUGCCGCCGggcgcgccGCA-GAAcGUGCGcCGCg -3' miRNA: 3'- aUGGCGGCGGU--------UGUaCUU-CAUGC-GCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 22833 | 0.71 | 0.379973 |
Target: 5'- cGCCGCgcUGCCGACAgccGAcAGcGCGCGCu -3' miRNA: 3'- aUGGCG--GCGGUUGUa--CU-UCaUGCGCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 34251 | 0.71 | 0.398625 |
Target: 5'- aAUCGCCGgCAGCAUccGGgcgcACGCGCa -3' miRNA: 3'- aUGGCGGCgGUUGUAcuUCa---UGCGCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 8049 | 0.71 | 0.398625 |
Target: 5'- uUGCCGCCGUC--CAUGAc--GCGCGCc -3' miRNA: 3'- -AUGGCGGCGGuuGUACUucaUGCGCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 14601 | 0.71 | 0.408168 |
Target: 5'- gGCCGgCGCCAccGCggGcAGcGCGCGCg -3' miRNA: 3'- aUGGCgGCGGU--UGuaCuUCaUGCGCG- -5' |
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26620 | 5' | -53.9 | NC_005357.1 | + | 21935 | 0.71 | 0.408168 |
Target: 5'- cACCGCCGaccaaggcCCAACggGGcacAGUGCGCGg -3' miRNA: 3'- aUGGCGGC--------GGUUGuaCU---UCAUGCGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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