miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26621 5' -58.6 NC_005357.1 + 27491 0.68 0.354164
Target:  5'- uCGCCGAguugggcgcgcagucGGCacuUGAGGCCGgccagCAgcagaUCGCCg -3'
miRNA:   3'- cGCGGCU---------------CCG---ACUCCGGUa----GU-----AGCGG- -5'
26621 5' -58.6 NC_005357.1 + 35625 0.66 0.441119
Target:  5'- cGCGCCGugucccuGGCUGAccaGGCgGUCAUagauucCCa -3'
miRNA:   3'- -CGCGGCu------CCGACU---CCGgUAGUAgc----GG- -5'
26621 5' -58.6 NC_005357.1 + 20959 0.69 0.326406
Target:  5'- aGCGCau-GGUcGAGGCCAaCAUCcuGCCg -3'
miRNA:   3'- -CGCGgcuCCGaCUCCGGUaGUAG--CGG- -5'
26621 5' -58.6 NC_005357.1 + 13129 0.73 0.175861
Target:  5'- aGUGCUG-GGCaaGGGCCAgcaguUCGUCGCCu -3'
miRNA:   3'- -CGCGGCuCCGacUCCGGU-----AGUAGCGG- -5'
26621 5' -58.6 NC_005357.1 + 31992 0.67 0.435333
Target:  5'- gGCGCCauugccaagcuguugGAaaugaaaaguGGC-GAGGCCAUCGgcgCGCUg -3'
miRNA:   3'- -CGCGG---------------CU----------CCGaCUCCGGUAGUa--GCGG- -5'
26621 5' -58.6 NC_005357.1 + 2444 0.67 0.41264
Target:  5'- gGCGCCGAaaCUGcGGCCcaggCGcUCGCCu -3'
miRNA:   3'- -CGCGGCUccGACuCCGGua--GU-AGCGG- -5'
26621 5' -58.6 NC_005357.1 + 17850 0.66 0.460712
Target:  5'- aCGCCGGacGGCccGAccguGGCCGgccucgcCAUCGCCg -3'
miRNA:   3'- cGCGGCU--CCGa-CU----CCGGUa------GUAGCGG- -5'
26621 5' -58.6 NC_005357.1 + 13874 0.66 0.490937
Target:  5'- cGCGCCGcgauGGCcGGcGGCCgcaagGUCGU-GCCg -3'
miRNA:   3'- -CGCGGCu---CCGaCU-CCGG-----UAGUAgCGG- -5'
26621 5' -58.6 NC_005357.1 + 16646 0.75 0.113198
Target:  5'- cGCGCCGcGcGCaucGcGGCCAUCGUUGCCg -3'
miRNA:   3'- -CGCGGCuC-CGa--CuCCGGUAGUAGCGG- -5'
26621 5' -58.6 NC_005357.1 + 14920 0.76 0.095601
Target:  5'- cGCGCCGAGaaGCUGGcGGCCGagGcCGCCg -3'
miRNA:   3'- -CGCGGCUC--CGACU-CCGGUagUaGCGG- -5'
26621 5' -58.6 NC_005357.1 + 18829 0.72 0.185581
Target:  5'- --aCCgGGGGCUGcacgcaugacGGCCAUCGUCGCCc -3'
miRNA:   3'- cgcGG-CUCCGACu---------CCGGUAGUAGCGG- -5'
26621 5' -58.6 NC_005357.1 + 37519 0.71 0.217623
Target:  5'- cGCuGCCGAcguuuccaccguGGCcgaaaacGAGGCCGcCGUCGCCg -3'
miRNA:   3'- -CG-CGGCU------------CCGa------CUCCGGUaGUAGCGG- -5'
26621 5' -58.6 NC_005357.1 + 12449 0.73 0.180663
Target:  5'- cCGuUCGAcGGCUGcauccAGGCCGUCGUgCGCCg -3'
miRNA:   3'- cGC-GGCU-CCGAC-----UCCGGUAGUA-GCGG- -5'
26621 5' -58.6 NC_005357.1 + 13304 0.71 0.237807
Target:  5'- cGCGCCGGGGCcgGcguuguaggcggcguAGGCUuUCggcagGUCGCCg -3'
miRNA:   3'- -CGCGGCUCCGa-C---------------UCCGGuAG-----UAGCGG- -5'
26621 5' -58.6 NC_005357.1 + 8639 0.67 0.41264
Target:  5'- gGUGgCGAGGUcgccGGCCuUCAUCGCg -3'
miRNA:   3'- -CGCgGCUCCGacu-CCGGuAGUAGCGg -5'
26621 5' -58.6 NC_005357.1 + 18396 0.67 0.394296
Target:  5'- gGCGCCGGuGGC---GGCCA-CGUCGgCg -3'
miRNA:   3'- -CGCGGCU-CCGacuCCGGUaGUAGCgG- -5'
26621 5' -58.6 NC_005357.1 + 40670 0.67 0.385324
Target:  5'- cGCGCC-AGGCgcaGGccGGCCAUgAcCGCCc -3'
miRNA:   3'- -CGCGGcUCCGa--CU--CCGGUAgUaGCGG- -5'
26621 5' -58.6 NC_005357.1 + 13023 0.67 0.385324
Target:  5'- aGCGCaGuGGC-GAcGGCCucGUCAUCGCg -3'
miRNA:   3'- -CGCGgCuCCGaCU-CCGG--UAGUAGCGg -5'
26621 5' -58.6 NC_005357.1 + 23545 0.69 0.303282
Target:  5'- cGCgGUCGAuGGCcucGGCCGaCAUCGCCg -3'
miRNA:   3'- -CG-CGGCU-CCGacuCCGGUaGUAGCGG- -5'
26621 5' -58.6 NC_005357.1 + 23948 0.69 0.303282
Target:  5'- gGCGCCGcccGGC-GAGGUCggCAuUUGCCg -3'
miRNA:   3'- -CGCGGCu--CCGaCUCCGGuaGU-AGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.