miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26622 3' -55.1 NC_005357.1 + 42002 1.08 0.000947
Target:  5'- gCACUAAGACCAACGUGGCCCGCGACGu -3'
miRNA:   3'- -GUGAUUCUGGUUGCACCGGGCGCUGC- -5'
26622 3' -55.1 NC_005357.1 + 33580 0.8 0.099693
Target:  5'- gACcGAGGCCAACGcgcUGGCCCGCGuuGCGg -3'
miRNA:   3'- gUGaUUCUGGUUGC---ACCGGGCGC--UGC- -5'
26622 3' -55.1 NC_005357.1 + 17748 0.79 0.108669
Target:  5'- aGCcuGGGCgugGACGUGGCCCGCGGCGg -3'
miRNA:   3'- gUGauUCUGg--UUGCACCGGGCGCUGC- -5'
26622 3' -55.1 NC_005357.1 + 13853 0.79 0.121819
Target:  5'- aCGCUGccgguGGCCGACGUGcGCgCCGCGAUGg -3'
miRNA:   3'- -GUGAUu----CUGGUUGCAC-CG-GGCGCUGC- -5'
26622 3' -55.1 NC_005357.1 + 37895 0.74 0.236089
Target:  5'- aGCccAAGACCuuCGUGGUCUGCGAUGc -3'
miRNA:   3'- gUGa-UUCUGGuuGCACCGGGCGCUGC- -5'
26622 3' -55.1 NC_005357.1 + 32594 0.74 0.236089
Target:  5'- aCGCUGuGACCAAgcUGGCCCGCGuCa -3'
miRNA:   3'- -GUGAUuCUGGUUgcACCGGGCGCuGc -5'
26622 3' -55.1 NC_005357.1 + 35174 0.72 0.305732
Target:  5'- gCAC-AAGGCCGGCGacaucGGCCCGCGcCa -3'
miRNA:   3'- -GUGaUUCUGGUUGCa----CCGGGCGCuGc -5'
26622 3' -55.1 NC_005357.1 + 14976 0.72 0.329488
Target:  5'- gCGCUGGcauACCAGCGccagGGCCUGCGGCc -3'
miRNA:   3'- -GUGAUUc--UGGUUGCa---CCGGGCGCUGc -5'
26622 3' -55.1 NC_005357.1 + 14937 0.71 0.354578
Target:  5'- gGCcGAGGCCGccggcauccucGCGUGGUgCGUGGCGg -3'
miRNA:   3'- gUGaUUCUGGU-----------UGCACCGgGCGCUGC- -5'
26622 3' -55.1 NC_005357.1 + 4616 0.7 0.42782
Target:  5'- aGCc-AGGCCAAUGuUGGCCCGCG-Cu -3'
miRNA:   3'- gUGauUCUGGUUGC-ACCGGGCGCuGc -5'
26622 3' -55.1 NC_005357.1 + 23733 0.69 0.457503
Target:  5'- gCGCUGcuGCUGACcgaGGCCCGCGugGu -3'
miRNA:   3'- -GUGAUucUGGUUGca-CCGGGCGCugC- -5'
26622 3' -55.1 NC_005357.1 + 12281 0.69 0.488253
Target:  5'- cCGCUGAuGuCCGACGcggugcaGGCCgGCGGCGu -3'
miRNA:   3'- -GUGAUU-CuGGUUGCa------CCGGgCGCUGC- -5'
26622 3' -55.1 NC_005357.1 + 22798 0.69 0.498718
Target:  5'- aCGCU--GGCCGAUGUcgcGGCCCGCaugaccccgGACGg -3'
miRNA:   3'- -GUGAuuCUGGUUGCA---CCGGGCG---------CUGC- -5'
26622 3' -55.1 NC_005357.1 + 18709 0.68 0.51994
Target:  5'- cCACcGAGGC--AC-UGGCCCGCGACc -3'
miRNA:   3'- -GUGaUUCUGguUGcACCGGGCGCUGc -5'
26622 3' -55.1 NC_005357.1 + 12458 0.68 0.530684
Target:  5'- gGCUGcauccAGGCCGuCGU-GCgCCGCGACGa -3'
miRNA:   3'- gUGAU-----UCUGGUuGCAcCG-GGCGCUGC- -5'
26622 3' -55.1 NC_005357.1 + 7377 0.68 0.530684
Target:  5'- -----cGuCCAGCGgcgGGCaCCGCGGCGa -3'
miRNA:   3'- gugauuCuGGUUGCa--CCG-GGCGCUGC- -5'
26622 3' -55.1 NC_005357.1 + 1707 0.68 0.563365
Target:  5'- uCGCcguGGGCCGGCGU-GCCgGCGAgGg -3'
miRNA:   3'- -GUGau-UCUGGUUGCAcCGGgCGCUgC- -5'
26622 3' -55.1 NC_005357.1 + 6617 0.67 0.574383
Target:  5'- -----uGACCAGCG-GGCgCGUGGCGc -3'
miRNA:   3'- gugauuCUGGUUGCaCCGgGCGCUGC- -5'
26622 3' -55.1 NC_005357.1 + 40271 0.67 0.574383
Target:  5'- aACUGuucGCCAACGUGuaCgGCGGCGc -3'
miRNA:   3'- gUGAUuc-UGGUUGCACcgGgCGCUGC- -5'
26622 3' -55.1 NC_005357.1 + 37547 0.67 0.585451
Target:  5'- ---aAGGACgCAugauuGCGUGGCUCGcCGGCGa -3'
miRNA:   3'- gugaUUCUG-GU-----UGCACCGGGC-GCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.