Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26622 | 3' | -55.1 | NC_005357.1 | + | 1707 | 0.68 | 0.563365 |
Target: 5'- uCGCcguGGGCCGGCGU-GCCgGCGAgGg -3' miRNA: 3'- -GUGau-UCUGGUUGCAcCGGgCGCUgC- -5' |
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26622 | 3' | -55.1 | NC_005357.1 | + | 4616 | 0.7 | 0.42782 |
Target: 5'- aGCc-AGGCCAAUGuUGGCCCGCG-Cu -3' miRNA: 3'- gUGauUCUGGUUGC-ACCGGGCGCuGc -5' |
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26622 | 3' | -55.1 | NC_005357.1 | + | 6617 | 0.67 | 0.574383 |
Target: 5'- -----uGACCAGCG-GGCgCGUGGCGc -3' miRNA: 3'- gugauuCUGGUUGCaCCGgGCGCUGC- -5' |
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26622 | 3' | -55.1 | NC_005357.1 | + | 7377 | 0.68 | 0.530684 |
Target: 5'- -----cGuCCAGCGgcgGGCaCCGCGGCGa -3' miRNA: 3'- gugauuCuGGUUGCa--CCG-GGCGCUGC- -5' |
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26622 | 3' | -55.1 | NC_005357.1 | + | 10003 | 0.66 | 0.65237 |
Target: 5'- uCGCUGccgucgucuuGGCaGACGUGGCgCGCGGCu -3' miRNA: 3'- -GUGAUu---------CUGgUUGCACCGgGCGCUGc -5' |
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26622 | 3' | -55.1 | NC_005357.1 | + | 10765 | 0.66 | 0.685708 |
Target: 5'- uGCUuguGGCCggUGUaGGCCCaccaaGCGGCa -3' miRNA: 3'- gUGAuu-CUGGuuGCA-CCGGG-----CGCUGc -5' |
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26622 | 3' | -55.1 | NC_005357.1 | + | 12006 | 0.67 | 0.596558 |
Target: 5'- cCACgucGGCCAGCagcgcggccGUGGCCgGCGAgGu -3' miRNA: 3'- -GUGauuCUGGUUG---------CACCGGgCGCUgC- -5' |
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26622 | 3' | -55.1 | NC_005357.1 | + | 12281 | 0.69 | 0.488253 |
Target: 5'- cCGCUGAuGuCCGACGcggugcaGGCCgGCGGCGu -3' miRNA: 3'- -GUGAUU-CuGGUUGCa------CCGGgCGCUGC- -5' |
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26622 | 3' | -55.1 | NC_005357.1 | + | 12458 | 0.68 | 0.530684 |
Target: 5'- gGCUGcauccAGGCCGuCGU-GCgCCGCGACGa -3' miRNA: 3'- gUGAU-----UCUGGUuGCAcCG-GGCGCUGC- -5' |
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26622 | 3' | -55.1 | NC_005357.1 | + | 13067 | 0.66 | 0.634499 |
Target: 5'- gGCUGGGgcaaggccACCGGCGcgugguucgaggacuUGGCCgGCGACc -3' miRNA: 3'- gUGAUUC--------UGGUUGC---------------ACCGGgCGCUGc -5' |
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26622 | 3' | -55.1 | NC_005357.1 | + | 13522 | 0.67 | 0.596558 |
Target: 5'- uUugUGGGACga--GUGGUCgGCGACGg -3' miRNA: 3'- -GugAUUCUGguugCACCGGgCGCUGC- -5' |
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26622 | 3' | -55.1 | NC_005357.1 | + | 13853 | 0.79 | 0.121819 |
Target: 5'- aCGCUGccgguGGCCGACGUGcGCgCCGCGAUGg -3' miRNA: 3'- -GUGAUu----CUGGUUGCAC-CG-GGCGCUGC- -5' |
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26622 | 3' | -55.1 | NC_005357.1 | + | 14937 | 0.71 | 0.354578 |
Target: 5'- gGCcGAGGCCGccggcauccucGCGUGGUgCGUGGCGg -3' miRNA: 3'- gUGaUUCUGGU-----------UGCACCGgGCGCUGC- -5' |
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26622 | 3' | -55.1 | NC_005357.1 | + | 14976 | 0.72 | 0.329488 |
Target: 5'- gCGCUGGcauACCAGCGccagGGCCUGCGGCc -3' miRNA: 3'- -GUGAUUc--UGGUUGCa---CCGGGCGCUGc -5' |
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26622 | 3' | -55.1 | NC_005357.1 | + | 16047 | 0.66 | 0.63003 |
Target: 5'- gUugU-AGGCCAguucgcgcACGUGGCCgccgcgCGCGGCGc -3' miRNA: 3'- -GugAuUCUGGU--------UGCACCGG------GCGCUGC- -5' |
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26622 | 3' | -55.1 | NC_005357.1 | + | 17748 | 0.79 | 0.108669 |
Target: 5'- aGCcuGGGCgugGACGUGGCCCGCGGCGg -3' miRNA: 3'- gUGauUCUGg--UUGCACCGGGCGCUGC- -5' |
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26622 | 3' | -55.1 | NC_005357.1 | + | 18709 | 0.68 | 0.51994 |
Target: 5'- cCACcGAGGC--AC-UGGCCCGCGACc -3' miRNA: 3'- -GUGaUUCUGguUGcACCGGGCGCUGc -5' |
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26622 | 3' | -55.1 | NC_005357.1 | + | 22798 | 0.69 | 0.498718 |
Target: 5'- aCGCU--GGCCGAUGUcgcGGCCCGCaugaccccgGACGg -3' miRNA: 3'- -GUGAuuCUGGUUGCA---CCGGGCG---------CUGC- -5' |
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26622 | 3' | -55.1 | NC_005357.1 | + | 23733 | 0.69 | 0.457503 |
Target: 5'- gCGCUGcuGCUGACcgaGGCCCGCGugGu -3' miRNA: 3'- -GUGAUucUGGUUGca-CCGGGCGCugC- -5' |
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26622 | 3' | -55.1 | NC_005357.1 | + | 24461 | 0.66 | 0.641204 |
Target: 5'- aCAUUGAcGCCGACGaccugcugcuUGGCCUGCGcCa -3' miRNA: 3'- -GUGAUUcUGGUUGC----------ACCGGGCGCuGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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