miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26622 3' -55.1 NC_005357.1 + 42002 1.08 0.000947
Target:  5'- gCACUAAGACCAACGUGGCCCGCGACGu -3'
miRNA:   3'- -GUGAUUCUGGUUGCACCGGGCGCUGC- -5'
26622 3' -55.1 NC_005357.1 + 31041 0.66 0.684602
Target:  5'- uCGCgcGGGCCAACGUgcgcgaaGGCCCGa-ACa -3'
miRNA:   3'- -GUGauUCUGGUUGCA-------CCGGGCgcUGc -5'
26622 3' -55.1 NC_005357.1 + 24461 0.66 0.641204
Target:  5'- aCAUUGAcGCCGACGaccugcugcuUGGCCUGCGcCa -3'
miRNA:   3'- -GUGAUUcUGGUUGC----------ACCGGGCGCuGc -5'
26622 3' -55.1 NC_005357.1 + 16047 0.66 0.63003
Target:  5'- gUugU-AGGCCAguucgcgcACGUGGCCgccgcgCGCGGCGc -3'
miRNA:   3'- -GugAuUCUGGU--------UGCACCGG------GCGCUGC- -5'
26622 3' -55.1 NC_005357.1 + 25498 0.67 0.618857
Target:  5'- uGCUuGG-UCAGgGUcaGGCCCGCGAUGa -3'
miRNA:   3'- gUGAuUCuGGUUgCA--CCGGGCGCUGC- -5'
26622 3' -55.1 NC_005357.1 + 12006 0.67 0.596558
Target:  5'- cCACgucGGCCAGCagcgcggccGUGGCCgGCGAgGu -3'
miRNA:   3'- -GUGauuCUGGUUG---------CACCGGgCGCUgC- -5'
26622 3' -55.1 NC_005357.1 + 31903 0.67 0.585451
Target:  5'- cCAUcGAGGCCGA-GU-GCCUGCGGCGu -3'
miRNA:   3'- -GUGaUUCUGGUUgCAcCGGGCGCUGC- -5'
26622 3' -55.1 NC_005357.1 + 37547 0.67 0.585451
Target:  5'- ---aAGGACgCAugauuGCGUGGCUCGcCGGCGa -3'
miRNA:   3'- gugaUUCUG-GU-----UGCACCGGGC-GCUGC- -5'
26622 3' -55.1 NC_005357.1 + 1707 0.68 0.563365
Target:  5'- uCGCcguGGGCCGGCGU-GCCgGCGAgGg -3'
miRNA:   3'- -GUGau-UCUGGUUGCAcCGGgCGCUgC- -5'
26622 3' -55.1 NC_005357.1 + 4616 0.7 0.42782
Target:  5'- aGCc-AGGCCAAUGuUGGCCCGCG-Cu -3'
miRNA:   3'- gUGauUCUGGUUGC-ACCGGGCGCuGc -5'
26622 3' -55.1 NC_005357.1 + 35174 0.72 0.305732
Target:  5'- gCAC-AAGGCCGGCGacaucGGCCCGCGcCa -3'
miRNA:   3'- -GUGaUUCUGGUUGCa----CCGGGCGCuGc -5'
26622 3' -55.1 NC_005357.1 + 37895 0.74 0.236089
Target:  5'- aGCccAAGACCuuCGUGGUCUGCGAUGc -3'
miRNA:   3'- gUGa-UUCUGGuuGCACCGGGCGCUGC- -5'
26622 3' -55.1 NC_005357.1 + 32594 0.74 0.236089
Target:  5'- aCGCUGuGACCAAgcUGGCCCGCGuCa -3'
miRNA:   3'- -GUGAUuCUGGUUgcACCGGGCGCuGc -5'
26622 3' -55.1 NC_005357.1 + 12281 0.69 0.488253
Target:  5'- cCGCUGAuGuCCGACGcggugcaGGCCgGCGGCGu -3'
miRNA:   3'- -GUGAUU-CuGGUUGCa------CCGGgCGCUGC- -5'
26622 3' -55.1 NC_005357.1 + 23733 0.69 0.457503
Target:  5'- gCGCUGcuGCUGACcgaGGCCCGCGugGu -3'
miRNA:   3'- -GUGAUucUGGUUGca-CCGGGCGCugC- -5'
26622 3' -55.1 NC_005357.1 + 14937 0.71 0.354578
Target:  5'- gGCcGAGGCCGccggcauccucGCGUGGUgCGUGGCGg -3'
miRNA:   3'- gUGaUUCUGGU-----------UGCACCGgGCGCUGC- -5'
26622 3' -55.1 NC_005357.1 + 14976 0.72 0.329488
Target:  5'- gCGCUGGcauACCAGCGccagGGCCUGCGGCc -3'
miRNA:   3'- -GUGAUUc--UGGUUGCa---CCGGGCGCUGc -5'
26622 3' -55.1 NC_005357.1 + 13853 0.79 0.121819
Target:  5'- aCGCUGccgguGGCCGACGUGcGCgCCGCGAUGg -3'
miRNA:   3'- -GUGAUu----CUGGUUGCAC-CG-GGCGCUGC- -5'
26622 3' -55.1 NC_005357.1 + 17748 0.79 0.108669
Target:  5'- aGCcuGGGCgugGACGUGGCCCGCGGCGg -3'
miRNA:   3'- gUGauUCUGg--UUGCACCGGGCGCUGC- -5'
26622 3' -55.1 NC_005357.1 + 10765 0.66 0.685708
Target:  5'- uGCUuguGGCCggUGUaGGCCCaccaaGCGGCa -3'
miRNA:   3'- gUGAuu-CUGGuuGCA-CCGGG-----CGCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.