miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26622 5' -59.5 NC_005357.1 + 4397 0.66 0.439656
Target:  5'- cGUCGCGC-CgGGCCuugaGCGUgcggCAGUCGu -3'
miRNA:   3'- -CAGCGCGcGaCCGG----CGCGa---GUUAGCc -5'
26622 5' -59.5 NC_005357.1 + 2587 0.66 0.439656
Target:  5'- -gCGCGCGCUuGCCGCccuGUUgCAAcCGGa -3'
miRNA:   3'- caGCGCGCGAcCGGCG---CGA-GUUaGCC- -5'
26622 5' -59.5 NC_005357.1 + 29129 0.66 0.439656
Target:  5'- -aCGCGCGCgaGGCCGCauucCUCugccAUCGc -3'
miRNA:   3'- caGCGCGCGa-CCGGCGc---GAGu---UAGCc -5'
26622 5' -59.5 NC_005357.1 + 27825 0.66 0.433921
Target:  5'- -gCGCGCGCUgcccgcgguggcgccGGCCGCGCcgcugcUCAAgaaCGu -3'
miRNA:   3'- caGCGCGCGA---------------CCGGCGCG------AGUUa--GCc -5'
26622 5' -59.5 NC_005357.1 + 995 0.66 0.430122
Target:  5'- cGUCGCcCGCUGcCCGCGC-CAcuggcCGGg -3'
miRNA:   3'- -CAGCGcGCGACcGGCGCGaGUua---GCC- -5'
26622 5' -59.5 NC_005357.1 + 26049 0.66 0.430122
Target:  5'- -cCGCGCgGCgGGCgcgcuccaUGCGCUCGGcgaacUCGGg -3'
miRNA:   3'- caGCGCG-CGaCCG--------GCGCGAGUU-----AGCC- -5'
26622 5' -59.5 NC_005357.1 + 41979 0.66 0.420711
Target:  5'- -cCGCaaGCUGGCCGCGCagCAGc--- -3'
miRNA:   3'- caGCGcgCGACCGGCGCGa-GUUagcc -5'
26622 5' -59.5 NC_005357.1 + 34055 0.66 0.420711
Target:  5'- --aGCGCGa-GGCCGgGUUCGAgcCGGa -3'
miRNA:   3'- cagCGCGCgaCCGGCgCGAGUUa-GCC- -5'
26622 5' -59.5 NC_005357.1 + 41048 0.66 0.411426
Target:  5'- cGUUGUGCGCgUGGCCGCGgCgcccuauGUCa- -3'
miRNA:   3'- -CAGCGCGCG-ACCGGCGC-Gagu----UAGcc -5'
26622 5' -59.5 NC_005357.1 + 1880 0.66 0.411426
Target:  5'- cGUgGCcgGCGCUGGCCGgGUgggCGAacagcagCGGg -3'
miRNA:   3'- -CAgCG--CGCGACCGGCgCGa--GUUa------GCC- -5'
26622 5' -59.5 NC_005357.1 + 18280 0.66 0.402268
Target:  5'- cGUCGagGCGCUgGGCCagGCGCgCAGcCGGc -3'
miRNA:   3'- -CAGCg-CGCGA-CCGG--CGCGaGUUaGCC- -5'
26622 5' -59.5 NC_005357.1 + 22856 0.66 0.402268
Target:  5'- -gCGCGCGCUgcgaauugGGCUGCuucugGUUCGcgCGGu -3'
miRNA:   3'- caGCGCGCGA--------CCGGCG-----CGAGUuaGCC- -5'
26622 5' -59.5 NC_005357.1 + 8996 0.66 0.402268
Target:  5'- uUCGCcaGCGgUGGCCGUGCcgCGAUagccagCGGu -3'
miRNA:   3'- cAGCG--CGCgACCGGCGCGa-GUUA------GCC- -5'
26622 5' -59.5 NC_005357.1 + 35334 0.66 0.402268
Target:  5'- aUCGUGCGCgUGGgCGCGC-CG--UGGg -3'
miRNA:   3'- cAGCGCGCG-ACCgGCGCGaGUuaGCC- -5'
26622 5' -59.5 NC_005357.1 + 13582 0.67 0.393241
Target:  5'- -aCGCGCGCUcGCCauCGCUCAccUGGa -3'
miRNA:   3'- caGCGCGCGAcCGGc-GCGAGUuaGCC- -5'
26622 5' -59.5 NC_005357.1 + 3875 0.67 0.393241
Target:  5'- cGUCGC-UGUaGGCCGCGCUgCcGUCGc -3'
miRNA:   3'- -CAGCGcGCGaCCGGCGCGA-GuUAGCc -5'
26622 5' -59.5 NC_005357.1 + 20628 0.67 0.387889
Target:  5'- gGUCG-GUGUcGGCCuGCGCUCGuuccuguccccgaauAUCGGu -3'
miRNA:   3'- -CAGCgCGCGaCCGG-CGCGAGU---------------UAGCC- -5'
26622 5' -59.5 NC_005357.1 + 21388 0.67 0.384347
Target:  5'- aUgGCGCGCUgGGCCuGCGCgagCA--UGGa -3'
miRNA:   3'- cAgCGCGCGA-CCGG-CGCGa--GUuaGCC- -5'
26622 5' -59.5 NC_005357.1 + 19887 0.67 0.384347
Target:  5'- cGUCGCGCGCcuucuUGGCCGUGg-CAAg--- -3'
miRNA:   3'- -CAGCGCGCG-----ACCGGCGCgaGUUagcc -5'
26622 5' -59.5 NC_005357.1 + 1670 0.67 0.384347
Target:  5'- uUUGCGCGUgaugcuGCCGCGCaggUAGUCGa -3'
miRNA:   3'- cAGCGCGCGac----CGGCGCGa--GUUAGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.