miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26623 3' -52.4 NC_005357.1 + 42091 0.66 0.773743
Target:  5'- gGCGagcACGUGUGGCAcgACCcccggUACGgCACg -3'
miRNA:   3'- aUGU---UGUACGCCGUa-UGG-----AUGCgGUG- -5'
26623 3' -52.4 NC_005357.1 + 2135 0.66 0.773743
Target:  5'- gUGCAGCAgcCGGUcaACC-GCGCCGCc -3'
miRNA:   3'- -AUGUUGUacGCCGuaUGGaUGCGGUG- -5'
26623 3' -52.4 NC_005357.1 + 9232 0.66 0.773743
Target:  5'- cGCGAUAgccaGCGGUggccGUGCCgaggGCGcCCACu -3'
miRNA:   3'- aUGUUGUa---CGCCG----UAUGGa---UGC-GGUG- -5'
26623 3' -52.4 NC_005357.1 + 25303 0.66 0.773743
Target:  5'- ----uCGUGCGGCcgGCCc-UGCCACc -3'
miRNA:   3'- auguuGUACGCCGuaUGGauGCGGUG- -5'
26623 3' -52.4 NC_005357.1 + 33814 0.66 0.773743
Target:  5'- aAgGGCGUacCGGCcacGCCUACGCCAUc -3'
miRNA:   3'- aUgUUGUAc-GCCGua-UGGAUGCGGUG- -5'
26623 3' -52.4 NC_005357.1 + 14767 0.66 0.773743
Target:  5'- cGCAGCGUGuCGGUGUcgAUCUGCuUCACg -3'
miRNA:   3'- aUGUUGUAC-GCCGUA--UGGAUGcGGUG- -5'
26623 3' -52.4 NC_005357.1 + 13622 0.66 0.762995
Target:  5'- gACAGCAUcgguaGCGGCAgcaaguCCgGCGCgGCc -3'
miRNA:   3'- aUGUUGUA-----CGCCGUau----GGaUGCGgUG- -5'
26623 3' -52.4 NC_005357.1 + 1080 0.66 0.762995
Target:  5'- aAC-GCGcGCGGUAgauUGCCUugGCCGu -3'
miRNA:   3'- aUGuUGUaCGCCGU---AUGGAugCGGUg -5'
26623 3' -52.4 NC_005357.1 + 4047 0.66 0.752096
Target:  5'- cGCGGCGaGCGGCAgGCCaGCgGCC-Ca -3'
miRNA:   3'- aUGUUGUaCGCCGUaUGGaUG-CGGuG- -5'
26623 3' -52.4 NC_005357.1 + 8208 0.66 0.752096
Target:  5'- aGCGACAUgGCGGCcaguuCgUGCGCgGCc -3'
miRNA:   3'- aUGUUGUA-CGCCGuau--GgAUGCGgUG- -5'
26623 3' -52.4 NC_005357.1 + 22311 0.66 0.752096
Target:  5'- gGCAGCAcgaugcUGCuGGcCGUGCCgaacGCGCCGa -3'
miRNA:   3'- aUGUUGU------ACG-CC-GUAUGGa---UGCGGUg -5'
26623 3' -52.4 NC_005357.1 + 42275 0.66 0.752096
Target:  5'- cGCAuccGCcUGCGGgGaaGCCUgGCGCCACg -3'
miRNA:   3'- aUGU---UGuACGCCgUa-UGGA-UGCGGUG- -5'
26623 3' -52.4 NC_005357.1 + 16850 0.66 0.74106
Target:  5'- gGCcGCAgaccGCGGCGUACaacuccgACGCCGa -3'
miRNA:   3'- aUGuUGUa---CGCCGUAUGga-----UGCGGUg -5'
26623 3' -52.4 NC_005357.1 + 3532 0.66 0.74106
Target:  5'- aGCGACGUGCcGUu--CCagGCGCCGCc -3'
miRNA:   3'- aUGUUGUACGcCGuauGGa-UGCGGUG- -5'
26623 3' -52.4 NC_005357.1 + 11198 0.66 0.74106
Target:  5'- --gAugGUGCGGUcaAUGCCgcgcaugacCGCCACg -3'
miRNA:   3'- augUugUACGCCG--UAUGGau-------GCGGUG- -5'
26623 3' -52.4 NC_005357.1 + 33732 0.66 0.74106
Target:  5'- gGCAGCAaucugcGCGGCGcacACCUGgGCgGCg -3'
miRNA:   3'- aUGUUGUa-----CGCCGUa--UGGAUgCGgUG- -5'
26623 3' -52.4 NC_005357.1 + 1747 0.66 0.74106
Target:  5'- aACAcCggGCGGuCAUggccgGCCUGCGCCugGCg -3'
miRNA:   3'- aUGUuGuaCGCC-GUA-----UGGAUGCGG--UG- -5'
26623 3' -52.4 NC_005357.1 + 21705 0.66 0.737724
Target:  5'- aGCAGCAUGuCGGCcugauggggugcccGUGCCU-CGUCGu -3'
miRNA:   3'- aUGUUGUAC-GCCG--------------UAUGGAuGCGGUg -5'
26623 3' -52.4 NC_005357.1 + 33960 0.66 0.729899
Target:  5'- -uCGGC-UGCGGCAUcgcaggccACCUcgACGCCGa -3'
miRNA:   3'- auGUUGuACGCCGUA--------UGGA--UGCGGUg -5'
26623 3' -52.4 NC_005357.1 + 8778 0.66 0.727654
Target:  5'- gGCAGCAcGCGGCGcacgaugggucgGCC-GCGCCGg -3'
miRNA:   3'- aUGUUGUaCGCCGUa-----------UGGaUGCGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.