miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26631 3' -68.1 NC_005808.1 + 9284 0.67 0.136081
Target:  5'- cGGGCGcGCCgcagaacgUGcGCC-GCGCCGCCGa-- -3'
miRNA:   3'- -CCCGC-CGG--------GC-CGGcCGCGGCGGCauc -5'
26631 3' -68.1 NC_005808.1 + 10549 0.67 0.136081
Target:  5'- --aCGGCCCguucgGGCCGGUGCUGCgCGa-- -3'
miRNA:   3'- cccGCCGGG-----CCGGCCGCGGCG-GCauc -5'
26631 3' -68.1 NC_005808.1 + 10762 0.67 0.14702
Target:  5'- --uCGGCCgaGGCCGugcGCGCUGCCGUcaAGa -3'
miRNA:   3'- cccGCCGGg-CCGGC---CGCGGCGGCA--UC- -5'
26631 3' -68.1 NC_005808.1 + 11654 0.66 0.154752
Target:  5'- cGGCGGCCa-GCCGGCgGCC-CUGg-- -3'
miRNA:   3'- cCCGCCGGgcCGGCCG-CGGcGGCauc -5'
26631 3' -68.1 NC_005808.1 + 11911 0.66 0.158754
Target:  5'- gGGGUucGCCCaGGCCaaccgcGGCGCgGCCGg-- -3'
miRNA:   3'- -CCCGc-CGGG-CCGG------CCGCGgCGGCauc -5'
26631 3' -68.1 NC_005808.1 + 12092 0.68 0.107613
Target:  5'- uGGGCaagaccucgccGGCCaCGGCC-GCGCUGCUGg-- -3'
miRNA:   3'- -CCCG-----------CCGG-GCCGGcCGCGGCGGCauc -5'
26631 3' -68.1 NC_005808.1 + 13187 0.68 0.110477
Target:  5'- uGGGC-GCCCuuGGCCGGCGUuguaCGCCu--- -3'
miRNA:   3'- -CCCGcCGGG--CCGGCCGCG----GCGGcauc -5'
26631 3' -68.1 NC_005808.1 + 13324 0.69 0.094311
Target:  5'- aGGCGGCguaggcuuUCGGCaGGuCGCCGCCGa-- -3'
miRNA:   3'- cCCGCCG--------GGCCGgCC-GCGGCGGCauc -5'
26631 3' -68.1 NC_005808.1 + 13506 0.67 0.143287
Target:  5'- aGGCcGCCaaGCUGGCGggcCUGCCGUGGg -3'
miRNA:   3'- cCCGcCGGgcCGGCCGC---GGCGGCAUC- -5'
26631 3' -68.1 NC_005808.1 + 14396 0.66 0.175712
Target:  5'- -aGCaGGCCCGGCaguucagccaaGGCGCgCGCCa--- -3'
miRNA:   3'- ccCG-CCGGGCCGg----------CCGCG-GCGGcauc -5'
26631 3' -68.1 NC_005808.1 + 16067 0.66 0.158754
Target:  5'- -cGUGGCC--GCCGcGCGCggCGCCGUAGa -3'
miRNA:   3'- ccCGCCGGgcCGGC-CGCG--GCGGCAUC- -5'
26631 3' -68.1 NC_005808.1 + 17009 0.66 0.16285
Target:  5'- cGGCGGCaCGcuGCUGGaCGgCGCCGUGc -3'
miRNA:   3'- cCCGCCGgGC--CGGCC-GCgGCGGCAUc -5'
26631 3' -68.1 NC_005808.1 + 18465 0.68 0.119502
Target:  5'- -cGCGGCgCCGG-CGGCGUCgGCCGa-- -3'
miRNA:   3'- ccCGCCG-GGCCgGCCGCGG-CGGCauc -5'
26631 3' -68.1 NC_005808.1 + 18541 0.71 0.070332
Target:  5'- cGGUGGacgaaUCGGCCGaCGCCGCCGgcGc -3'
miRNA:   3'- cCCGCCg----GGCCGGCcGCGGCGGCauC- -5'
26631 3' -68.1 NC_005808.1 + 19872 0.68 0.12266
Target:  5'- cGGGCGuGCCgaaGGCguCGcGCGCCuucuugGCCGUGGc -3'
miRNA:   3'- -CCCGC-CGGg--CCG--GC-CGCGG------CGGCAUC- -5'
26631 3' -68.1 NC_005808.1 + 21772 0.67 0.14702
Target:  5'- aGGCcGCCCGGCaCGGUGCUGauGUc- -3'
miRNA:   3'- cCCGcCGGGCCG-GCCGCGGCggCAuc -5'
26631 3' -68.1 NC_005808.1 + 21822 0.67 0.137495
Target:  5'- cGGGCGGCCuguccuauguggacgCGGCC-GCGCCcaaCgGUGGc -3'
miRNA:   3'- -CCCGCCGG---------------GCCGGcCGCGGc--GgCAUC- -5'
26631 3' -68.1 NC_005808.1 + 22490 0.66 0.16704
Target:  5'- gGGGCgGGCUgGGCUGGUcauGCCcGCCa--- -3'
miRNA:   3'- -CCCG-CCGGgCCGGCCG---CGG-CGGcauc -5'
26631 3' -68.1 NC_005808.1 + 23739 0.67 0.14702
Target:  5'- cGGUGGCgCGcagcagcgccauGCCGGCGCCaCCGg-- -3'
miRNA:   3'- cCCGCCGgGC------------CGGCCGCGGcGGCauc -5'
26631 3' -68.1 NC_005808.1 + 23814 0.74 0.042059
Target:  5'- cGGUGGCgCCGGCaUGGCGCUGCUGc-- -3'
miRNA:   3'- cCCGCCG-GGCCG-GCCGCGGCGGCauc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.