Results 21 - 40 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26631 | 3' | -68.1 | NC_005808.1 | + | 24302 | 0.71 | 0.070332 |
Target: 5'- gGGGCGGUgaGGUCGGCGagcaGCCGcGGg -3' miRNA: 3'- -CCCGCCGggCCGGCCGCgg--CGGCaUC- -5' |
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26631 | 3' | -68.1 | NC_005808.1 | + | 4804 | 0.7 | 0.074206 |
Target: 5'- cGGCuGGCgcugcgggauugCUGGCCGGCgacagGUCGCCGUAGu -3' miRNA: 3'- cCCG-CCG------------GGCCGGCCG-----CGGCGGCAUC- -5' |
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26631 | 3' | -68.1 | NC_005808.1 | + | 41321 | 0.7 | 0.082577 |
Target: 5'- uGGGUcgcuGGCCgGGaauaCCGGCGCuCGCCGg-- -3' miRNA: 3'- -CCCG----CCGGgCC----GGCCGCG-GCGGCauc -5' |
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26631 | 3' | -68.1 | NC_005808.1 | + | 6389 | 0.69 | 0.089439 |
Target: 5'- aGGCGcaGgCCGGCCGGC-CCGgUGUAGu -3' miRNA: 3'- cCCGC--CgGGCCGGCCGcGGCgGCAUC- -5' |
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26631 | 3' | -68.1 | NC_005808.1 | + | 13324 | 0.69 | 0.094311 |
Target: 5'- aGGCGGCguaggcuuUCGGCaGGuCGCCGCCGa-- -3' miRNA: 3'- cCCGCCG--------GGCCGgCC-GCGGCGGCauc -5' |
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26631 | 3' | -68.1 | NC_005808.1 | + | 24575 | 0.69 | 0.096841 |
Target: 5'- aGGcCGGCCaCGGUCGG-GCCGuCCGgcGu -3' miRNA: 3'- cCC-GCCGG-GCCGGCCgCGGC-GGCauC- -5' |
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26631 | 3' | -68.1 | NC_005808.1 | + | 19872 | 0.68 | 0.12266 |
Target: 5'- cGGGCGuGCCgaaGGCguCGcGCGCCuucuugGCCGUGGc -3' miRNA: 3'- -CCCGC-CGGg--CCG--GC-CGCGG------CGGCAUC- -5' |
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26631 | 3' | -68.1 | NC_005808.1 | + | 40573 | 0.68 | 0.12266 |
Target: 5'- aGGCGGCCgGuauGCCGGUGCUGgUGgcGu -3' miRNA: 3'- cCCGCCGGgC---CGGCCGCGGCgGCauC- -5' |
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26631 | 3' | -68.1 | NC_005808.1 | + | 18465 | 0.68 | 0.119502 |
Target: 5'- -cGCGGCgCCGG-CGGCGUCgGCCGa-- -3' miRNA: 3'- ccCGCCG-GGCCgGCCGCGG-CGGCauc -5' |
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26631 | 3' | -68.1 | NC_005808.1 | + | 25507 | 0.68 | 0.116116 |
Target: 5'- aGGGUcaGGCCCgcgaugaGGUCGGUuuuGCCGCCGc-- -3' miRNA: 3'- -CCCG--CCGGG-------CCGGCCG---CGGCGGCauc -5' |
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26631 | 3' | -68.1 | NC_005808.1 | + | 13187 | 0.68 | 0.110477 |
Target: 5'- uGGGC-GCCCuuGGCCGGCGUuguaCGCCu--- -3' miRNA: 3'- -CCCGcCGGG--CCGGCCGCG----GCGGcauc -5' |
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26631 | 3' | -68.1 | NC_005808.1 | + | 1314 | 0.68 | 0.107613 |
Target: 5'- aGGGCgacGGCCaccaGGCCGacaaGCGCgaggaaGCCGUGGu -3' miRNA: 3'- -CCCG---CCGGg---CCGGC----CGCGg-----CGGCAUC- -5' |
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26631 | 3' | -68.1 | NC_005808.1 | + | 40912 | 0.71 | 0.072244 |
Target: 5'- cGGGCGGUcauggCCGGCCuGCGCCuggcgcgucggGCCGa-- -3' miRNA: 3'- -CCCGCCG-----GGCCGGcCGCGG-----------CGGCauc -5' |
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26631 | 3' | -68.1 | NC_005808.1 | + | 18541 | 0.71 | 0.070332 |
Target: 5'- cGGUGGacgaaUCGGCCGaCGCCGCCGgcGc -3' miRNA: 3'- cCCGCCg----GGCCGGCcGCGGCGGCauC- -5' |
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26631 | 3' | -68.1 | NC_005808.1 | + | 37564 | 0.72 | 0.059843 |
Target: 5'- cGGcCGGCCCagcguccggugcGGCUGGCGCCGuuGa-- -3' miRNA: 3'- cCC-GCCGGG------------CCGGCCGCGGCggCauc -5' |
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26631 | 3' | -68.1 | NC_005808.1 | + | 5636 | 0.72 | 0.050876 |
Target: 5'- uGGCGGCCaGcGuuGGCGCCGUCGa-- -3' miRNA: 3'- cCCGCCGGgC-CggCCGCGGCGGCauc -5' |
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26631 | 3' | -68.1 | NC_005808.1 | + | 1037 | 0.73 | 0.043221 |
Target: 5'- aGGCGGCCaaguGGCUGcaaGCUGCCGUGGg -3' miRNA: 3'- cCCGCCGGg---CCGGCcg-CGGCGGCAUC- -5' |
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26631 | 3' | -68.1 | NC_005808.1 | + | 23814 | 0.74 | 0.042059 |
Target: 5'- cGGUGGCgCCGGCaUGGCGCUGCUGc-- -3' miRNA: 3'- cCCGCCG-GGCCG-GCCGCGGCGGCauc -5' |
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26631 | 3' | -68.1 | NC_005808.1 | + | 27901 | 0.77 | 0.020059 |
Target: 5'- -aGCGGCgCGGCCGGCGCCaCCGcGGg -3' miRNA: 3'- ccCGCCGgGCCGGCCGCGGcGGCaUC- -5' |
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26631 | 3' | -68.1 | NC_005808.1 | + | 14396 | 0.66 | 0.175712 |
Target: 5'- -aGCaGGCCCGGCaguucagccaaGGCGCgCGCCa--- -3' miRNA: 3'- ccCG-CCGGGCCGg----------CCGCG-GCGGcauc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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