miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26632 5' -58.2 NC_005808.1 + 29736 0.66 0.484662
Target:  5'- -aACACaCGGCCgcGCCCugCUGGgCa- -3'
miRNA:   3'- gaUGUG-GUUGGa-CGGGugGACCgGcu -5'
26632 5' -58.2 NC_005808.1 + 31705 0.66 0.484662
Target:  5'- -aGCACCGccugACCaGCCCGCCgcgcgcgGGCUu- -3'
miRNA:   3'- gaUGUGGU----UGGaCGGGUGGa------CCGGcu -5'
26632 5' -58.2 NC_005808.1 + 14810 0.66 0.484662
Target:  5'- cCUGCACCucggcGGCgCUGCCUucGCCcaGGUCGAu -3'
miRNA:   3'- -GAUGUGG-----UUG-GACGGG--UGGa-CCGGCU- -5'
26632 5' -58.2 NC_005808.1 + 5575 0.66 0.484662
Target:  5'- -gGCGCCAACgCUGgCCGCCaccGuGUCGAu -3'
miRNA:   3'- gaUGUGGUUG-GACgGGUGGa--C-CGGCU- -5'
26632 5' -58.2 NC_005808.1 + 37353 0.66 0.474442
Target:  5'- -gACcCCGACCUGCCgGCCgaacuGCgCGAa -3'
miRNA:   3'- gaUGuGGUUGGACGGgUGGac---CG-GCU- -5'
26632 5' -58.2 NC_005808.1 + 37158 0.66 0.474442
Target:  5'- -gAUACCGACCUcGCCCACgccGCCa- -3'
miRNA:   3'- gaUGUGGUUGGA-CGGGUGgacCGGcu -5'
26632 5' -58.2 NC_005808.1 + 24466 0.66 0.474442
Target:  5'- -gACGCCGacgACCUG-CUGCUUGGCCu- -3'
miRNA:   3'- gaUGUGGU---UGGACgGGUGGACCGGcu -5'
26632 5' -58.2 NC_005808.1 + 4690 0.66 0.464331
Target:  5'- cCUGCGgCAGCgCggGCCaacauugGCCUGGCUGAc -3'
miRNA:   3'- -GAUGUgGUUG-Ga-CGGg------UGGACCGGCU- -5'
26632 5' -58.2 NC_005808.1 + 11479 0.66 0.464331
Target:  5'- -cACGCCGGCucgccgCUGCUCAagacCCUGGCCc- -3'
miRNA:   3'- gaUGUGGUUG------GACGGGU----GGACCGGcu -5'
26632 5' -58.2 NC_005808.1 + 36223 0.66 0.463326
Target:  5'- -gGCgGCCGACCUgguguaacccagcGCCCcgGCCUucgGGCCGGg -3'
miRNA:   3'- gaUG-UGGUUGGA-------------CGGG--UGGA---CCGGCU- -5'
26632 5' -58.2 NC_005808.1 + 24072 0.66 0.454333
Target:  5'- aUugGCCGACgC-GCCCACCuucgccagucugUGcGCCGAa -3'
miRNA:   3'- gAugUGGUUG-GaCGGGUGG------------AC-CGGCU- -5'
26632 5' -58.2 NC_005808.1 + 12206 0.66 0.454333
Target:  5'- -cGCGCU-GCCUGCC--CCUGGUCGGg -3'
miRNA:   3'- gaUGUGGuUGGACGGguGGACCGGCU- -5'
26632 5' -58.2 NC_005808.1 + 37065 0.66 0.45334
Target:  5'- aUugACCAGaagCUGCCgGCCUGGaacuaccaaggcaCCGAg -3'
miRNA:   3'- gAugUGGUUg--GACGGgUGGACC-------------GGCU- -5'
26632 5' -58.2 NC_005808.1 + 4889 0.66 0.444454
Target:  5'- aCUACGgCGACCUG-UCGCC-GGCCa- -3'
miRNA:   3'- -GAUGUgGUUGGACgGGUGGaCCGGcu -5'
26632 5' -58.2 NC_005808.1 + 35341 0.67 0.434696
Target:  5'- gCUGCACaagGCCggcgacaucgGCCCgcGCCagUGGCCGAa -3'
miRNA:   3'- -GAUGUGgu-UGGa---------CGGG--UGG--ACCGGCU- -5'
26632 5' -58.2 NC_005808.1 + 37491 0.67 0.425063
Target:  5'- -gGCGCCAGCC-GCaccggaCGCUgGGCCGGc -3'
miRNA:   3'- gaUGUGGUUGGaCGg-----GUGGaCCGGCU- -5'
26632 5' -58.2 NC_005808.1 + 40901 0.67 0.425063
Target:  5'- ---gGCCGGCCUGCgCCugGCgCgucgGGCCGAu -3'
miRNA:   3'- gaugUGGUUGGACG-GG--UG-Ga---CCGGCU- -5'
26632 5' -58.2 NC_005808.1 + 21757 0.67 0.425063
Target:  5'- -aACcUCGACCUGUCgCACCUucuGGCUGAc -3'
miRNA:   3'- gaUGuGGUUGGACGG-GUGGA---CCGGCU- -5'
26632 5' -58.2 NC_005808.1 + 19852 0.67 0.419345
Target:  5'- uCUACcggGCCGGCCUGgcaaucagugaagaCCGCCucgUGGCCGGc -3'
miRNA:   3'- -GAUG---UGGUUGGACg-------------GGUGG---ACCGGCU- -5'
26632 5' -58.2 NC_005808.1 + 2501 0.67 0.415559
Target:  5'- -gGCGCCGAUCUucgagGCCgGCCUGcuGCCGu -3'
miRNA:   3'- gaUGUGGUUGGA-----CGGgUGGAC--CGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.