Results 1 - 20 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26632 | 5' | -58.2 | NC_005808.1 | + | 29736 | 0.66 | 0.484662 |
Target: 5'- -aACACaCGGCCgcGCCCugCUGGgCa- -3' miRNA: 3'- gaUGUG-GUUGGa-CGGGugGACCgGcu -5' |
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26632 | 5' | -58.2 | NC_005808.1 | + | 31705 | 0.66 | 0.484662 |
Target: 5'- -aGCACCGccugACCaGCCCGCCgcgcgcgGGCUu- -3' miRNA: 3'- gaUGUGGU----UGGaCGGGUGGa------CCGGcu -5' |
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26632 | 5' | -58.2 | NC_005808.1 | + | 14810 | 0.66 | 0.484662 |
Target: 5'- cCUGCACCucggcGGCgCUGCCUucGCCcaGGUCGAu -3' miRNA: 3'- -GAUGUGG-----UUG-GACGGG--UGGa-CCGGCU- -5' |
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26632 | 5' | -58.2 | NC_005808.1 | + | 5575 | 0.66 | 0.484662 |
Target: 5'- -gGCGCCAACgCUGgCCGCCaccGuGUCGAu -3' miRNA: 3'- gaUGUGGUUG-GACgGGUGGa--C-CGGCU- -5' |
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26632 | 5' | -58.2 | NC_005808.1 | + | 24466 | 0.66 | 0.474442 |
Target: 5'- -gACGCCGacgACCUG-CUGCUUGGCCu- -3' miRNA: 3'- gaUGUGGU---UGGACgGGUGGACCGGcu -5' |
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26632 | 5' | -58.2 | NC_005808.1 | + | 37353 | 0.66 | 0.474442 |
Target: 5'- -gACcCCGACCUGCCgGCCgaacuGCgCGAa -3' miRNA: 3'- gaUGuGGUUGGACGGgUGGac---CG-GCU- -5' |
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26632 | 5' | -58.2 | NC_005808.1 | + | 37158 | 0.66 | 0.474442 |
Target: 5'- -gAUACCGACCUcGCCCACgccGCCa- -3' miRNA: 3'- gaUGUGGUUGGA-CGGGUGgacCGGcu -5' |
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26632 | 5' | -58.2 | NC_005808.1 | + | 4690 | 0.66 | 0.464331 |
Target: 5'- cCUGCGgCAGCgCggGCCaacauugGCCUGGCUGAc -3' miRNA: 3'- -GAUGUgGUUG-Ga-CGGg------UGGACCGGCU- -5' |
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26632 | 5' | -58.2 | NC_005808.1 | + | 11479 | 0.66 | 0.464331 |
Target: 5'- -cACGCCGGCucgccgCUGCUCAagacCCUGGCCc- -3' miRNA: 3'- gaUGUGGUUG------GACGGGU----GGACCGGcu -5' |
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26632 | 5' | -58.2 | NC_005808.1 | + | 36223 | 0.66 | 0.463326 |
Target: 5'- -gGCgGCCGACCUgguguaacccagcGCCCcgGCCUucgGGCCGGg -3' miRNA: 3'- gaUG-UGGUUGGA-------------CGGG--UGGA---CCGGCU- -5' |
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26632 | 5' | -58.2 | NC_005808.1 | + | 12206 | 0.66 | 0.454333 |
Target: 5'- -cGCGCU-GCCUGCC--CCUGGUCGGg -3' miRNA: 3'- gaUGUGGuUGGACGGguGGACCGGCU- -5' |
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26632 | 5' | -58.2 | NC_005808.1 | + | 24072 | 0.66 | 0.454333 |
Target: 5'- aUugGCCGACgC-GCCCACCuucgccagucugUGcGCCGAa -3' miRNA: 3'- gAugUGGUUG-GaCGGGUGG------------AC-CGGCU- -5' |
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26632 | 5' | -58.2 | NC_005808.1 | + | 37065 | 0.66 | 0.45334 |
Target: 5'- aUugACCAGaagCUGCCgGCCUGGaacuaccaaggcaCCGAg -3' miRNA: 3'- gAugUGGUUg--GACGGgUGGACC-------------GGCU- -5' |
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26632 | 5' | -58.2 | NC_005808.1 | + | 4889 | 0.66 | 0.444454 |
Target: 5'- aCUACGgCGACCUG-UCGCC-GGCCa- -3' miRNA: 3'- -GAUGUgGUUGGACgGGUGGaCCGGcu -5' |
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26632 | 5' | -58.2 | NC_005808.1 | + | 35341 | 0.67 | 0.434696 |
Target: 5'- gCUGCACaagGCCggcgacaucgGCCCgcGCCagUGGCCGAa -3' miRNA: 3'- -GAUGUGgu-UGGa---------CGGG--UGG--ACCGGCU- -5' |
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26632 | 5' | -58.2 | NC_005808.1 | + | 37491 | 0.67 | 0.425063 |
Target: 5'- -gGCGCCAGCC-GCaccggaCGCUgGGCCGGc -3' miRNA: 3'- gaUGUGGUUGGaCGg-----GUGGaCCGGCU- -5' |
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26632 | 5' | -58.2 | NC_005808.1 | + | 40901 | 0.67 | 0.425063 |
Target: 5'- ---gGCCGGCCUGCgCCugGCgCgucgGGCCGAu -3' miRNA: 3'- gaugUGGUUGGACG-GG--UG-Ga---CCGGCU- -5' |
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26632 | 5' | -58.2 | NC_005808.1 | + | 21757 | 0.67 | 0.425063 |
Target: 5'- -aACcUCGACCUGUCgCACCUucuGGCUGAc -3' miRNA: 3'- gaUGuGGUUGGACGG-GUGGA---CCGGCU- -5' |
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26632 | 5' | -58.2 | NC_005808.1 | + | 19852 | 0.67 | 0.419345 |
Target: 5'- uCUACcggGCCGGCCUGgcaaucagugaagaCCGCCucgUGGCCGGc -3' miRNA: 3'- -GAUG---UGGUUGGACg-------------GGUGG---ACCGGCU- -5' |
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26632 | 5' | -58.2 | NC_005808.1 | + | 18759 | 0.67 | 0.415559 |
Target: 5'- gCUGCuGCUGACCgagGCCCGCgUgguguaacaGGCCGGg -3' miRNA: 3'- -GAUG-UGGUUGGa--CGGGUGgA---------CCGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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