miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26632 5' -58.2 NC_005808.1 + 17938 0.71 0.223736
Target:  5'- uCUGCAauCUGGCCcugGCCUACCUGGgCGAc -3'
miRNA:   3'- -GAUGU--GGUUGGa--CGGGUGGACCgGCU- -5'
26632 5' -58.2 NC_005808.1 + 31005 0.71 0.229714
Target:  5'- -cACGCgCGACCUGUCCacgggcuuGCC-GGCCGAg -3'
miRNA:   3'- gaUGUG-GUUGGACGGG--------UGGaCCGGCU- -5'
26632 5' -58.2 NC_005808.1 + 27238 0.71 0.229714
Target:  5'- uUGCuguCCAGCCggcGCCCcaggcuCUUGGCCGAg -3'
miRNA:   3'- gAUGu--GGUUGGa--CGGGu-----GGACCGGCU- -5'
26632 5' -58.2 NC_005808.1 + 968 0.71 0.235827
Target:  5'- -cACGgCAGCUUGCagCCACUUGGCCGc -3'
miRNA:   3'- gaUGUgGUUGGACG--GGUGGACCGGCu -5'
26632 5' -58.2 NC_005808.1 + 10914 0.71 0.235827
Target:  5'- -aAUGgCGACCUGCCCGCCgguuugcagGGCCu- -3'
miRNA:   3'- gaUGUgGUUGGACGGGUGGa--------CCGGcu -5'
26632 5' -58.2 NC_005808.1 + 21127 0.71 0.235827
Target:  5'- --gUAUCGACgCUGCCCAgCUUGGCCGc -3'
miRNA:   3'- gauGUGGUUG-GACGGGU-GGACCGGCu -5'
26632 5' -58.2 NC_005808.1 + 703 0.71 0.237688
Target:  5'- -gGCACCGACUcgacgccggacgccgUGUCCACggcgcugCUGGCCGAc -3'
miRNA:   3'- gaUGUGGUUGG---------------ACGGGUG-------GACCGGCU- -5'
26632 5' -58.2 NC_005808.1 + 41676 0.71 0.242076
Target:  5'- cCUuCACCGucGCCcgcUGCCCGCgccaCUGGCCGGg -3'
miRNA:   3'- -GAuGUGGU--UGG---ACGGGUG----GACCGGCU- -5'
26632 5' -58.2 NC_005808.1 + 38547 0.7 0.248462
Target:  5'- cCUGgGCCGcugGCCUGCCgcuCGCCgcGGCCGGc -3'
miRNA:   3'- -GAUgUGGU---UGGACGG---GUGGa-CCGGCU- -5'
26632 5' -58.2 NC_005808.1 + 13249 0.7 0.254986
Target:  5'- -aACGCCGGCCaagggcGCCCAgCgcGGCCGAc -3'
miRNA:   3'- gaUGUGGUUGGa-----CGGGUgGa-CCGGCU- -5'
26632 5' -58.2 NC_005808.1 + 40495 0.7 0.254986
Target:  5'- uCUAUACCGACgacacgGCgaCCACCUGGgCCGAu -3'
miRNA:   3'- -GAUGUGGUUGga----CG--GGUGGACC-GGCU- -5'
26632 5' -58.2 NC_005808.1 + 11058 0.7 0.268456
Target:  5'- aUACGCuCAugCaauCCgGCCUGGCCGAa -3'
miRNA:   3'- gAUGUG-GUugGac-GGgUGGACCGGCU- -5'
26632 5' -58.2 NC_005808.1 + 2657 0.7 0.275404
Target:  5'- cCU-CGCCAACCUGCUgGCCUugcaaGCUGAa -3'
miRNA:   3'- -GAuGUGGUUGGACGGgUGGAc----CGGCU- -5'
26632 5' -58.2 NC_005808.1 + 24133 0.7 0.275404
Target:  5'- gUAguCCAGCCggcUGCgCGCCUGGCCc- -3'
miRNA:   3'- gAUguGGUUGG---ACGgGUGGACCGGcu -5'
26632 5' -58.2 NC_005808.1 + 23254 0.7 0.281779
Target:  5'- -gAgGCCGACCUGCUgcugucgCACCagcagggGGCCGAa -3'
miRNA:   3'- gaUgUGGUUGGACGG-------GUGGa------CCGGCU- -5'
26632 5' -58.2 NC_005808.1 + 26257 0.69 0.289729
Target:  5'- -gGCACgGgcACCcGCCgGCCUGGUCGGc -3'
miRNA:   3'- gaUGUGgU--UGGaCGGgUGGACCGGCU- -5'
26632 5' -58.2 NC_005808.1 + 28640 0.69 0.304633
Target:  5'- gCUGCcggugGCCGACgUGCgCGCCgcgaUGGCCGGc -3'
miRNA:   3'- -GAUG-----UGGUUGgACGgGUGG----ACCGGCU- -5'
26632 5' -58.2 NC_005808.1 + 23326 0.69 0.311529
Target:  5'- -gACACCGACCUGaccaugcuguucCCCAgCgaggcgcggucggUGGCCGAg -3'
miRNA:   3'- gaUGUGGUUGGAC------------GGGUgG-------------ACCGGCU- -5'
26632 5' -58.2 NC_005808.1 + 24646 0.69 0.312302
Target:  5'- -cACGCCGGacgGCCCgACCgUGGCCGGc -3'
miRNA:   3'- gaUGUGGUUggaCGGG-UGG-ACCGGCU- -5'
26632 5' -58.2 NC_005808.1 + 40798 0.69 0.312302
Target:  5'- uUGCAgguUCAGCCcgugGCCgGCgCUGGCCGGg -3'
miRNA:   3'- gAUGU---GGUUGGa---CGGgUG-GACCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.