Results 1 - 20 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
26633 | 5' | -55.1 | NC_005808.1 | + | 1158 | 1.09 | 0.000707 |
Target: 5'- cCGCGCGACACGGCCAAGGCAAUCUACc -3' miRNA: 3'- -GCGCGCUGUGCCGGUUCCGUUAGAUG- -5' |
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26633 | 5' | -55.1 | NC_005808.1 | + | 31006 | 0.81 | 0.078143 |
Target: 5'- aCGCGCGACcuguccacgggcuuGcCGGCCGAGGCAAUCg-- -3' miRNA: 3'- -GCGCGCUG--------------U-GCCGGUUCCGUUAGaug -5' |
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26633 | 5' | -55.1 | NC_005808.1 | + | 32930 | 0.75 | 0.202251 |
Target: 5'- aCG-GCGGCuguuCGGCCAGGGCGAccacggCUGCg -3' miRNA: 3'- -GCgCGCUGu---GCCGGUUCCGUUa-----GAUG- -5' |
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26633 | 5' | -55.1 | NC_005808.1 | + | 39664 | 0.75 | 0.202251 |
Target: 5'- cCGCGCGACGCGGUguGGGCcg---GCa -3' miRNA: 3'- -GCGCGCUGUGCCGguUCCGuuagaUG- -5' |
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26633 | 5' | -55.1 | NC_005808.1 | + | 31773 | 0.75 | 0.207846 |
Target: 5'- gCGCGCGGCGggcUGGUC-AGGCGGUgCUGCa -3' miRNA: 3'- -GCGCGCUGU---GCCGGuUCCGUUA-GAUG- -5' |
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26633 | 5' | -55.1 | NC_005808.1 | + | 10600 | 0.74 | 0.213574 |
Target: 5'- uGCGCGugGCGGCgGAaagcguggccGGCGGUCaGCa -3' miRNA: 3'- gCGCGCugUGCCGgUU----------CCGUUAGaUG- -5' |
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26633 | 5' | -55.1 | NC_005808.1 | + | 16403 | 0.74 | 0.225438 |
Target: 5'- gGCGUugcucgaaguagGACACGGCCGcgGGGUAAUCgccgGCg -3' miRNA: 3'- gCGCG------------CUGUGCCGGU--UCCGUUAGa---UG- -5' |
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26633 | 5' | -55.1 | NC_005808.1 | + | 9534 | 0.74 | 0.237856 |
Target: 5'- uGCuGCGGCccuguuCGGCCAGuGCGAUCUGCu -3' miRNA: 3'- gCG-CGCUGu-----GCCGGUUcCGUUAGAUG- -5' |
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26633 | 5' | -55.1 | NC_005808.1 | + | 33616 | 0.74 | 0.237856 |
Target: 5'- cCGCugGCGGCACGGCCAccgcuGGCgAAUCcgGCa -3' miRNA: 3'- -GCG--CGCUGUGCCGGUu----CCG-UUAGa-UG- -5' |
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26633 | 5' | -55.1 | NC_005808.1 | + | 33314 | 0.74 | 0.244276 |
Target: 5'- -uCGCGGCACGGCCAccgcuGGCuAUCgcgGCa -3' miRNA: 3'- gcGCGCUGUGCCGGUu----CCGuUAGa--UG- -5' |
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26633 | 5' | -55.1 | NC_005808.1 | + | 33362 | 0.74 | 0.244276 |
Target: 5'- -uCGCGGCACGGCCAccgcuGGCuAUCgcgGCa -3' miRNA: 3'- gcGCGCUGUGCCGGUu----CCGuUAGa--UG- -5' |
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26633 | 5' | -55.1 | NC_005808.1 | + | 33410 | 0.74 | 0.244276 |
Target: 5'- -uCGCGGCACGGCCAccgcuGGCuAUCgcgGCa -3' miRNA: 3'- gcGCGCUGUGCCGGUu----CCGuUAGa--UG- -5' |
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26633 | 5' | -55.1 | NC_005808.1 | + | 33458 | 0.74 | 0.244276 |
Target: 5'- -uCGCGGCACGGCCAccgcuGGCuAUCgcgGCa -3' miRNA: 3'- gcGCGCUGUGCCGGUu----CCGuUAGa--UG- -5' |
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26633 | 5' | -55.1 | NC_005808.1 | + | 33506 | 0.74 | 0.244276 |
Target: 5'- -uCGCGGCACGGCCAccgcuGGCuAUCgcgGCa -3' miRNA: 3'- gcGCGCUGUGCCGGUu----CCGuUAGa--UG- -5' |
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26633 | 5' | -55.1 | NC_005808.1 | + | 33266 | 0.74 | 0.244276 |
Target: 5'- -uCGCGGCACGGCCAccgcuGGCuAUCgcgGCa -3' miRNA: 3'- gcGCGCUGUGCCGGUu----CCGuUAGa--UG- -5' |
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26633 | 5' | -55.1 | NC_005808.1 | + | 33218 | 0.74 | 0.244276 |
Target: 5'- -uCGCGGCACGGCCAccgcuGGCuAUCgcgGCa -3' miRNA: 3'- gcGCGCUGUGCCGGUu----CCGuUAGa--UG- -5' |
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26633 | 5' | -55.1 | NC_005808.1 | + | 27526 | 0.73 | 0.250178 |
Target: 5'- uGCGCGGCGCGcuggcauaccagcGCCAGGGC---CUGCg -3' miRNA: 3'- gCGCGCUGUGC-------------CGGUUCCGuuaGAUG- -5' |
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26633 | 5' | -55.1 | NC_005808.1 | + | 33578 | 0.73 | 0.264405 |
Target: 5'- -uCGCGGCACGGCCAccgcuGGCgAAUCcgGCa -3' miRNA: 3'- gcGCGCUGUGCCGGUu----CCG-UUAGa-UG- -5' |
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26633 | 5' | -55.1 | NC_005808.1 | + | 27190 | 0.72 | 0.285858 |
Target: 5'- gCGCGCGGCgucagcuuuGCaGGCUAAGGCAcugGUaCUGCa -3' miRNA: 3'- -GCGCGCUG---------UG-CCGGUUCCGU---UA-GAUG- -5' |
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26633 | 5' | -55.1 | NC_005808.1 | + | 8391 | 0.72 | 0.299377 |
Target: 5'- uCGCGCuGGCugcguagccaguCGGCCAGGGCcgugcgcuuGUCUACg -3' miRNA: 3'- -GCGCG-CUGu-----------GCCGGUUCCGu--------UAGAUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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