miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26633 5' -55.1 NC_005808.1 + 40099 0.72 0.300909
Target:  5'- uGUGCGACACGGCCcAGcGCG---UGCg -3'
miRNA:   3'- gCGCGCUGUGCCGGuUC-CGUuagAUG- -5'
26633 5' -55.1 NC_005808.1 + 25997 0.72 0.307879
Target:  5'- aGCGCGgcgacauGCugGGCCAccGCAAgCUGCa -3'
miRNA:   3'- gCGCGC-------UGugCCGGUucCGUUaGAUG- -5'
26633 5' -55.1 NC_005808.1 + 20783 0.72 0.308661
Target:  5'- uCGCGCGgcuGCACGuCCAugucGGUGAUCUGCa -3'
miRNA:   3'- -GCGCGC---UGUGCcGGUu---CCGUUAGAUG- -5'
26633 5' -55.1 NC_005808.1 + 4087 0.71 0.34034
Target:  5'- cCGCGCGGCAugacgcuggUGGCCGgcgcguuuuGGGCGgacaucuAUCUGCu -3'
miRNA:   3'- -GCGCGCUGU---------GCCGGU---------UCCGU-------UAGAUG- -5'
26633 5' -55.1 NC_005808.1 + 27904 0.71 0.347123
Target:  5'- aGCaGCGGCGCGGCCGgcgccaccgcGGGCAgcgcgcgcgaggacGUgCUGCg -3'
miRNA:   3'- gCG-CGCUGUGCCGGU----------UCCGU--------------UA-GAUG- -5'
26633 5' -55.1 NC_005808.1 + 27251 0.71 0.367157
Target:  5'- gGCGCcccaGGCucuUGGCCGAGGCAAUgaACc -3'
miRNA:   3'- gCGCG----CUGu--GCCGGUUCCGUUAgaUG- -5'
26633 5' -55.1 NC_005808.1 + 29823 0.7 0.385213
Target:  5'- aCGCGCcuGGCAgCaGCCGAGGCcgaguUCUACg -3'
miRNA:   3'- -GCGCG--CUGU-GcCGGUUCCGuu---AGAUG- -5'
26633 5' -55.1 NC_005808.1 + 34848 0.7 0.385213
Target:  5'- uCGC-UGAUAUGGUCGAGGCGcggCUGCa -3'
miRNA:   3'- -GCGcGCUGUGCCGGUUCCGUua-GAUG- -5'
26633 5' -55.1 NC_005808.1 + 10701 0.7 0.385213
Target:  5'- aGCGCG-CACGGCCucGGCcgaUUGCu -3'
miRNA:   3'- gCGCGCuGUGCCGGuuCCGuuaGAUG- -5'
26633 5' -55.1 NC_005808.1 + 31631 0.7 0.403847
Target:  5'- aGCGUGGCAgGGCCucAAGGCA---UACc -3'
miRNA:   3'- gCGCGCUGUgCCGG--UUCCGUuagAUG- -5'
26633 5' -55.1 NC_005808.1 + 28410 0.7 0.403847
Target:  5'- gCGCGCugcccGACGaGGCCAAGGCcAUCg-- -3'
miRNA:   3'- -GCGCG-----CUGUgCCGGUUCCGuUAGaug -5'
26633 5' -55.1 NC_005808.1 + 24560 0.7 0.403847
Target:  5'- aGCGCGGCGauggcgaggcCGGCCAcggucGGGCcGUCcgGCg -3'
miRNA:   3'- gCGCGCUGU----------GCCGGU-----UCCGuUAGa-UG- -5'
26633 5' -55.1 NC_005808.1 + 34214 0.7 0.403847
Target:  5'- gGCGCGAUGuCGGCguCGAGGUGGcCUGCg -3'
miRNA:   3'- gCGCGCUGU-GCCG--GUUCCGUUaGAUG- -5'
26633 5' -55.1 NC_005808.1 + 37037 0.7 0.410502
Target:  5'- gCGCGUGGCGCGGCgCAgcuugcugguggcuGGacGCGGUUUGCa -3'
miRNA:   3'- -GCGCGCUGUGCCG-GU--------------UC--CGUUAGAUG- -5'
26633 5' -55.1 NC_005808.1 + 21175 0.7 0.422068
Target:  5'- aGCGCGGCcugcugcGCGGCCugcuGCuGGUCUGCg -3'
miRNA:   3'- gCGCGCUG-------UGCCGGuuc-CG-UUAGAUG- -5'
26633 5' -55.1 NC_005808.1 + 21206 0.69 0.43284
Target:  5'- gGCGCGGacacgGCGGCCAagcuGGGCAgcGUCg-- -3'
miRNA:   3'- gCGCGCUg----UGCCGGU----UCCGU--UAGaug -5'
26633 5' -55.1 NC_005808.1 + 22387 0.69 0.43284
Target:  5'- gGCGCGuucgGCACGGCCAGcaGCAucgugCUGCc -3'
miRNA:   3'- gCGCGC----UGUGCCGGUUc-CGUua---GAUG- -5'
26633 5' -55.1 NC_005808.1 + 23619 0.69 0.43284
Target:  5'- uGCcgGCGAUGuCGGCCGAGGCcAUCgaccGCg -3'
miRNA:   3'- gCG--CGCUGU-GCCGGUUCCGuUAGa---UG- -5'
26633 5' -55.1 NC_005808.1 + 1673 0.69 0.442771
Target:  5'- gCGCGUGAUGCuGCCGcgcAGGUAGUCg-- -3'
miRNA:   3'- -GCGCGCUGUGcCGGU---UCCGUUAGaug -5'
26633 5' -55.1 NC_005808.1 + 22125 0.69 0.442771
Target:  5'- aGCGCGcCGCGGUCGaacAGGC--UUUGCa -3'
miRNA:   3'- gCGCGCuGUGCCGGU---UCCGuuAGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.