miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26633 5' -55.1 NC_005808.1 + 12796 0.66 0.615296
Target:  5'- gGCGCGGCACccagcaccaacgGGCC-GGGCGA-CUugaACa -3'
miRNA:   3'- gCGCGCUGUG------------CCGGuUCCGUUaGA---UG- -5'
26633 5' -55.1 NC_005808.1 + 12982 0.69 0.452829
Target:  5'- aGCGUuaugGGCGCGGCCGAGcGCA-UCg-- -3'
miRNA:   3'- gCGCG----CUGUGCCGGUUC-CGUuAGaug -5'
26633 5' -55.1 NC_005808.1 + 13070 0.67 0.563764
Target:  5'- uGCGCuGCGCGGCCuguacgagaacggcGGGCGGUUUuCg -3'
miRNA:   3'- gCGCGcUGUGCCGGu-------------UCCGUUAGAuG- -5'
26633 5' -55.1 NC_005808.1 + 13147 0.67 0.581593
Target:  5'- gCGCGCGugGaGGCCGAGcGcCAAUUcaacaUGCa -3'
miRNA:   3'- -GCGCGCugUgCCGGUUC-C-GUUAG-----AUG- -5'
26633 5' -55.1 NC_005808.1 + 13407 0.67 0.559328
Target:  5'- uGCGCGACuuCGGC---GGCGAcCUGCc -3'
miRNA:   3'- gCGCGCUGu-GCCGguuCCGUUaGAUG- -5'
26633 5' -55.1 NC_005808.1 + 14213 0.69 0.442771
Target:  5'- aCGCGCuGGaACGGCCGgaAGGCAAgccgCUGg -3'
miRNA:   3'- -GCGCG-CUgUGCCGGU--UCCGUUa---GAUg -5'
26633 5' -55.1 NC_005808.1 + 14735 0.68 0.526411
Target:  5'- aGCGCucaACACccgccccaGGCCAAGGUgcaagguaucAAUCUGCg -3'
miRNA:   3'- gCGCGc--UGUG--------CCGGUUCCG----------UUAGAUG- -5'
26633 5' -55.1 NC_005808.1 + 14912 0.66 0.626575
Target:  5'- gCGUGCGGCGCuGGCCGccaacGGCA-UCg-- -3'
miRNA:   3'- -GCGCGCUGUG-CCGGUu----CCGUuAGaug -5'
26633 5' -55.1 NC_005808.1 + 16403 0.74 0.225438
Target:  5'- gGCGUugcucgaaguagGACACGGCCGcgGGGUAAUCgccgGCg -3'
miRNA:   3'- gCGCG------------CUGUGCCGGU--UCCGUUAGa---UG- -5'
26633 5' -55.1 NC_005808.1 + 17518 0.66 0.637858
Target:  5'- gGCGUGGCACcuGGCCucgaugcuGGCGGggccaCUGCu -3'
miRNA:   3'- gCGCGCUGUG--CCGGuu------CCGUUa----GAUG- -5'
26633 5' -55.1 NC_005808.1 + 20783 0.72 0.308661
Target:  5'- uCGCGCGgcuGCACGuCCAugucGGUGAUCUGCa -3'
miRNA:   3'- -GCGCGC---UGUGCcGGUu---CCGUUAGAUG- -5'
26633 5' -55.1 NC_005808.1 + 21175 0.7 0.422068
Target:  5'- aGCGCGGCcugcugcGCGGCCugcuGCuGGUCUGCg -3'
miRNA:   3'- gCGCGCUG-------UGCCGGuuc-CG-UUAGAUG- -5'
26633 5' -55.1 NC_005808.1 + 21206 0.69 0.43284
Target:  5'- gGCGCGGacacgGCGGCCAagcuGGGCAgcGUCg-- -3'
miRNA:   3'- gCGCGCUg----UGCCGGU----UCCGU--UAGaug -5'
26633 5' -55.1 NC_005808.1 + 21574 0.66 0.604033
Target:  5'- uCGUGCcGCuCGGCCAcuucgguGGCGgucAUCUGCg -3'
miRNA:   3'- -GCGCGcUGuGCCGGUu------CCGU---UAGAUG- -5'
26633 5' -55.1 NC_005808.1 + 21717 0.68 0.504873
Target:  5'- uGCGCGAgCGCa--CAAGGCGAguuUCUACg -3'
miRNA:   3'- gCGCGCU-GUGccgGUUCCGUU---AGAUG- -5'
26633 5' -55.1 NC_005808.1 + 22125 0.69 0.442771
Target:  5'- aGCGCGcCGCGGUCGaacAGGC--UUUGCa -3'
miRNA:   3'- gCGCGCuGUGCCGGU---UCCGuuAGAUG- -5'
26633 5' -55.1 NC_005808.1 + 22224 0.68 0.504873
Target:  5'- aGCGUauuGACGCGGCCcuGGUuGUCgGCc -3'
miRNA:   3'- gCGCG---CUGUGCCGGuuCCGuUAGaUG- -5'
26633 5' -55.1 NC_005808.1 + 22387 0.69 0.43284
Target:  5'- gGCGCGuucgGCACGGCCAGcaGCAucgugCUGCc -3'
miRNA:   3'- gCGCGC----UGUGCCGGUUc-CGUua---GAUG- -5'
26633 5' -55.1 NC_005808.1 + 23388 0.66 0.649136
Target:  5'- uGCGCGGCuaccacgucauccCGGCCAgugccggccgcaaacAGGCAuUCgugGCg -3'
miRNA:   3'- gCGCGCUGu------------GCCGGU---------------UCCGUuAGa--UG- -5'
26633 5' -55.1 NC_005808.1 + 23619 0.69 0.43284
Target:  5'- uGCcgGCGAUGuCGGCCGAGGCcAUCgaccGCg -3'
miRNA:   3'- gCG--CGCUGU-GCCGGUUCCGuUAGa---UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.