miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26633 5' -55.1 NC_005808.1 + 31631 0.7 0.403847
Target:  5'- aGCGUGGCAgGGCCucAAGGCA---UACc -3'
miRNA:   3'- gCGCGCUGUgCCGG--UUCCGUuagAUG- -5'
26633 5' -55.1 NC_005808.1 + 33266 0.74 0.244276
Target:  5'- -uCGCGGCACGGCCAccgcuGGCuAUCgcgGCa -3'
miRNA:   3'- gcGCGCUGUGCCGGUu----CCGuUAGa--UG- -5'
26633 5' -55.1 NC_005808.1 + 33218 0.74 0.244276
Target:  5'- -uCGCGGCACGGCCAccgcuGGCuAUCgcgGCa -3'
miRNA:   3'- gcGCGCUGUGCCGGUu----CCGuUAGa--UG- -5'
26633 5' -55.1 NC_005808.1 + 33616 0.74 0.237856
Target:  5'- cCGCugGCGGCACGGCCAccgcuGGCgAAUCcgGCa -3'
miRNA:   3'- -GCG--CGCUGUGCCGGUu----CCG-UUAGa-UG- -5'
26633 5' -55.1 NC_005808.1 + 9534 0.74 0.237856
Target:  5'- uGCuGCGGCccuguuCGGCCAGuGCGAUCUGCu -3'
miRNA:   3'- gCG-CGCUGu-----GCCGGUUcCGUUAGAUG- -5'
26633 5' -55.1 NC_005808.1 + 16403 0.74 0.225438
Target:  5'- gGCGUugcucgaaguagGACACGGCCGcgGGGUAAUCgccgGCg -3'
miRNA:   3'- gCGCG------------CUGUGCCGGU--UCCGUUAGa---UG- -5'
26633 5' -55.1 NC_005808.1 + 39664 0.75 0.202251
Target:  5'- cCGCGCGACGCGGUguGGGCcg---GCa -3'
miRNA:   3'- -GCGCGCUGUGCCGguUCCGuuagaUG- -5'
26633 5' -55.1 NC_005808.1 + 32930 0.75 0.202251
Target:  5'- aCG-GCGGCuguuCGGCCAGGGCGAccacggCUGCg -3'
miRNA:   3'- -GCgCGCUGu---GCCGGUUCCGUUa-----GAUG- -5'
26633 5' -55.1 NC_005808.1 + 31006 0.81 0.078143
Target:  5'- aCGCGCGACcuguccacgggcuuGcCGGCCGAGGCAAUCg-- -3'
miRNA:   3'- -GCGCGCUG--------------U-GCCGGUUCCGUUAGaug -5'
26633 5' -55.1 NC_005808.1 + 33314 0.74 0.244276
Target:  5'- -uCGCGGCACGGCCAccgcuGGCuAUCgcgGCa -3'
miRNA:   3'- gcGCGCUGUGCCGGUu----CCGuUAGa--UG- -5'
26633 5' -55.1 NC_005808.1 + 33362 0.74 0.244276
Target:  5'- -uCGCGGCACGGCCAccgcuGGCuAUCgcgGCa -3'
miRNA:   3'- gcGCGCUGUGCCGGUu----CCGuUAGa--UG- -5'
26633 5' -55.1 NC_005808.1 + 10701 0.7 0.385213
Target:  5'- aGCGCG-CACGGCCucGGCcgaUUGCu -3'
miRNA:   3'- gCGCGCuGUGCCGGuuCCGuuaGAUG- -5'
26633 5' -55.1 NC_005808.1 + 27251 0.71 0.367157
Target:  5'- gGCGCcccaGGCucuUGGCCGAGGCAAUgaACc -3'
miRNA:   3'- gCGCG----CUGu--GCCGGUUCCGUUAgaUG- -5'
26633 5' -55.1 NC_005808.1 + 20783 0.72 0.308661
Target:  5'- uCGCGCGgcuGCACGuCCAugucGGUGAUCUGCa -3'
miRNA:   3'- -GCGCGC---UGUGCcGGUu---CCGUUAGAUG- -5'
26633 5' -55.1 NC_005808.1 + 8391 0.72 0.299377
Target:  5'- uCGCGCuGGCugcguagccaguCGGCCAGGGCcgugcgcuuGUCUACg -3'
miRNA:   3'- -GCGCG-CUGu-----------GCCGGUUCCGu--------UAGAUG- -5'
26633 5' -55.1 NC_005808.1 + 33578 0.73 0.264405
Target:  5'- -uCGCGGCACGGCCAccgcuGGCgAAUCcgGCa -3'
miRNA:   3'- gcGCGCUGUGCCGGUu----CCG-UUAGa-UG- -5'
26633 5' -55.1 NC_005808.1 + 33506 0.74 0.244276
Target:  5'- -uCGCGGCACGGCCAccgcuGGCuAUCgcgGCa -3'
miRNA:   3'- gcGCGCUGUGCCGGUu----CCGuUAGa--UG- -5'
26633 5' -55.1 NC_005808.1 + 33458 0.74 0.244276
Target:  5'- -uCGCGGCACGGCCAccgcuGGCuAUCgcgGCa -3'
miRNA:   3'- gcGCGCUGUGCCGGUu----CCGuUAGa--UG- -5'
26633 5' -55.1 NC_005808.1 + 33410 0.74 0.244276
Target:  5'- -uCGCGGCACGGCCAccgcuGGCuAUCgcgGCa -3'
miRNA:   3'- gcGCGCUGUGCCGGUu----CCGuUAGa--UG- -5'
26633 5' -55.1 NC_005808.1 + 28732 0.66 0.660398
Target:  5'- cCGCGCuGGCGaGGCCGccGGCAccgAUCUGg -3'
miRNA:   3'- -GCGCG-CUGUgCCGGUu-CCGU---UAGAUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.