miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26633 5' -55.1 NC_005808.1 + 1673 0.69 0.442771
Target:  5'- gCGCGUGAUGCuGCCGcgcAGGUAGUCg-- -3'
miRNA:   3'- -GCGCGCUGUGcCGGU---UCCGUUAGaug -5'
26633 5' -55.1 NC_005808.1 + 32930 0.75 0.202251
Target:  5'- aCG-GCGGCuguuCGGCCAGGGCGAccacggCUGCg -3'
miRNA:   3'- -GCgCGCUGu---GCCGGUUCCGUUa-----GAUG- -5'
26633 5' -55.1 NC_005808.1 + 33663 0.66 0.660398
Target:  5'- gGCGaaucCGGCACGGCCAccgcuGGCGAa---- -3'
miRNA:   3'- gCGC----GCUGUGCCGGUu----CCGUUagaug -5'
26633 5' -55.1 NC_005808.1 + 7207 0.66 0.637858
Target:  5'- aGCGCGAugucCACGGCa---GC-AUCUGCg -3'
miRNA:   3'- gCGCGCU----GUGCCGguucCGuUAGAUG- -5'
26633 5' -55.1 NC_005808.1 + 25796 0.66 0.626575
Target:  5'- gCGCGCGGCGCG-CUc-GGUaucguuGAUCUGCa -3'
miRNA:   3'- -GCGCGCUGUGCcGGuuCCG------UUAGAUG- -5'
26633 5' -55.1 NC_005808.1 + 9334 0.66 0.615296
Target:  5'- gGCGCGGCG-GGCgGcGGCAuccuUUUGCa -3'
miRNA:   3'- gCGCGCUGUgCCGgUuCCGUu---AGAUG- -5'
26633 5' -55.1 NC_005808.1 + 21574 0.66 0.604033
Target:  5'- uCGUGCcGCuCGGCCAcuucgguGGCGgucAUCUGCg -3'
miRNA:   3'- -GCGCGcUGuGCCGGUu------CCGU---UAGAUG- -5'
26633 5' -55.1 NC_005808.1 + 31145 0.67 0.592795
Target:  5'- aGCGCGACGacGCUAAGGUAuggUUGCc -3'
miRNA:   3'- gCGCGCUGUgcCGGUUCCGUua-GAUG- -5'
26633 5' -55.1 NC_005808.1 + 38398 0.67 0.586069
Target:  5'- cCGCGaCGugcuCGCGGCCAacaugcccgccaucgAGGCGGccggCUACc -3'
miRNA:   3'- -GCGC-GCu---GUGCCGGU---------------UCCGUUa---GAUG- -5'
26633 5' -55.1 NC_005808.1 + 207 0.67 0.570434
Target:  5'- cCGgGCGACACGGCgAAcuGGCGcaccUCgGCa -3'
miRNA:   3'- -GCgCGCUGUGCCGgUU--CCGUu---AGaUG- -5'
26633 5' -55.1 NC_005808.1 + 4695 0.67 0.548284
Target:  5'- aGCGCGGCgagaAUGGCC--GGCAAguuguuggCUGCu -3'
miRNA:   3'- gCGCGCUG----UGCCGGuuCCGUUa-------GAUG- -5'
26633 5' -55.1 NC_005808.1 + 41665 0.67 0.548284
Target:  5'- aGCGUGGagaauuCGaCCAAGGCAggCUACg -3'
miRNA:   3'- gCGCGCUgu----GCcGGUUCCGUuaGAUG- -5'
26633 5' -55.1 NC_005808.1 + 7664 0.67 0.548284
Target:  5'- uGC-CGuACACGcGCCGuucuuuggcGGCGAUCUGCg -3'
miRNA:   3'- gCGcGC-UGUGC-CGGUu--------CCGUUAGAUG- -5'
26633 5' -55.1 NC_005808.1 + 25586 0.68 0.515597
Target:  5'- aCGcCGCGGucUGCGGCCcAGGCAGUg-GCa -3'
miRNA:   3'- -GC-GCGCU--GUGCCGGuUCCGUUAgaUG- -5'
26633 5' -55.1 NC_005808.1 + 40348 0.68 0.51452
Target:  5'- uGCGCGucgaacuGC-CGGCCAAGGCccggcGUUUAUa -3'
miRNA:   3'- gCGCGC-------UGuGCCGGUUCCGu----UAGAUG- -5'
26633 5' -55.1 NC_005808.1 + 22224 0.68 0.504873
Target:  5'- aGCGUauuGACGCGGCCcuGGUuGUCgGCc -3'
miRNA:   3'- gCGCG---CUGUGCCGGuuCCGuUAGaUG- -5'
26633 5' -55.1 NC_005808.1 + 41428 0.68 0.488972
Target:  5'- aGCGCGAUACGGCUguccuucaccaucGAcGGCGAgcgcaaacggccgCUGCu -3'
miRNA:   3'- gCGCGCUGUGCCGG-------------UU-CCGUUa------------GAUG- -5'
26633 5' -55.1 NC_005808.1 + 37647 0.69 0.467116
Target:  5'- aGCGCGAuaCGCGGCUgcaucguggcgcccgAGGGCAAgaagCUGg -3'
miRNA:   3'- gCGCGCU--GUGCCGG---------------UUCCGUUa---GAUg -5'
26633 5' -55.1 NC_005808.1 + 22125 0.69 0.442771
Target:  5'- aGCGCGcCGCGGUCGaacAGGC--UUUGCa -3'
miRNA:   3'- gCGCGCuGUGCCGGU---UCCGuuAGAUG- -5'
26633 5' -55.1 NC_005808.1 + 11634 0.67 0.568209
Target:  5'- uGgGCGGCAUGGCUucgaugaccggcGGGCAGUcCUAUc -3'
miRNA:   3'- gCgCGCUGUGCCGGu-----------UCCGUUA-GAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.