miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26633 5' -55.1 NC_005808.1 + 26405 0.67 0.570434
Target:  5'- aCGaGCGGCGCGGCCAGuucGCGGUgcGCg -3'
miRNA:   3'- -GCgCGCUGUGCCGGUUc--CGUUAgaUG- -5'
26633 5' -55.1 NC_005808.1 + 4695 0.67 0.548284
Target:  5'- aGCGCGGCgagaAUGGCC--GGCAAguuguuggCUGCu -3'
miRNA:   3'- gCGCGCUG----UGCCGGuuCCGUUa-------GAUG- -5'
26633 5' -55.1 NC_005808.1 + 32918 0.67 0.581593
Target:  5'- gGCGcCGACcgucuGCGGCCA-GGCGAagccgUUGCg -3'
miRNA:   3'- gCGC-GCUG-----UGCCGGUuCCGUUa----GAUG- -5'
26633 5' -55.1 NC_005808.1 + 32184 0.67 0.569321
Target:  5'- gGCGUcgaggucGGCAgCGGCCAGGGCGuUgaGCa -3'
miRNA:   3'- gCGCG-------CUGU-GCCGGUUCCGUuAgaUG- -5'
26633 5' -55.1 NC_005808.1 + 24118 0.67 0.570434
Target:  5'- uGCGCGGCAUGGaaAccGCAAUCg-- -3'
miRNA:   3'- gCGCGCUGUGCCggUucCGUUAGaug -5'
26633 5' -55.1 NC_005808.1 + 13407 0.67 0.559328
Target:  5'- uGCGCGACuuCGGC---GGCGAcCUGCc -3'
miRNA:   3'- gCGCGCUGu-GCCGguuCCGUUaGAUG- -5'
26633 5' -55.1 NC_005808.1 + 13070 0.67 0.563764
Target:  5'- uGCGCuGCGCGGCCuguacgagaacggcGGGCGGUUUuCg -3'
miRNA:   3'- gCGCGcUGUGCCGGu-------------UCCGUUAGAuG- -5'
26633 5' -55.1 NC_005808.1 + 7416 0.67 0.544984
Target:  5'- gGCGUGGCACGagugguugaucgacGCCAAccGGCug-CUGCg -3'
miRNA:   3'- gCGCGCUGUGC--------------CGGUU--CCGuuaGAUG- -5'
26633 5' -55.1 NC_005808.1 + 13147 0.67 0.581593
Target:  5'- gCGCGCGugGaGGCCGAGcGcCAAUUcaacaUGCa -3'
miRNA:   3'- -GCGCGCugUgCCGGUUC-C-GUUAG-----AUG- -5'
26633 5' -55.1 NC_005808.1 + 11634 0.67 0.568209
Target:  5'- uGgGCGGCAUGGCUucgaugaccggcGGGCAGUcCUAUc -3'
miRNA:   3'- gCgCGCUGUGCCGGu-----------UCCGUUA-GAUG- -5'
26633 5' -55.1 NC_005808.1 + 8022 0.67 0.581593
Target:  5'- uGCGCGcCGaGGCCAcGGGCAAgCUGu -3'
miRNA:   3'- gCGCGCuGUgCCGGU-UCCGUUaGAUg -5'
26633 5' -55.1 NC_005808.1 + 14735 0.68 0.526411
Target:  5'- aGCGCucaACACccgccccaGGCCAAGGUgcaagguaucAAUCUGCg -3'
miRNA:   3'- gCGCGc--UGUG--------CCGGUUCCG----------UUAGAUG- -5'
26633 5' -55.1 NC_005808.1 + 10783 0.68 0.504873
Target:  5'- gGCGaCGACGCauucaagcaaucGGCCGAGGCcgugcgcgCUGCc -3'
miRNA:   3'- gCGC-GCUGUG------------CCGGUUCCGuua-----GAUG- -5'
26633 5' -55.1 NC_005808.1 + 21717 0.68 0.504873
Target:  5'- uGCGCGAgCGCa--CAAGGCGAguuUCUACg -3'
miRNA:   3'- gCGCGCU-GUGccgGUUCCGUU---AGAUG- -5'
26633 5' -55.1 NC_005808.1 + 37232 0.68 0.537309
Target:  5'- gGCGCGGaugGCGGCguGGGCGagGUCg-- -3'
miRNA:   3'- gCGCGCUg--UGCCGguUCCGU--UAGaug -5'
26633 5' -55.1 NC_005808.1 + 25586 0.68 0.515597
Target:  5'- aCGcCGCGGucUGCGGCCcAGGCAGUg-GCa -3'
miRNA:   3'- -GC-GCGCU--GUGCCGGuUCCGUUAgaUG- -5'
26633 5' -55.1 NC_005808.1 + 40348 0.68 0.51452
Target:  5'- uGCGCGucgaacuGC-CGGCCAAGGCccggcGUUUAUa -3'
miRNA:   3'- gCGCGC-------UGuGCCGGUUCCGu----UAGAUG- -5'
26633 5' -55.1 NC_005808.1 + 22224 0.68 0.504873
Target:  5'- aGCGUauuGACGCGGCCcuGGUuGUCgGCc -3'
miRNA:   3'- gCGCG---CUGUGCCGGuuCCGuUAGaUG- -5'
26633 5' -55.1 NC_005808.1 + 41428 0.68 0.488972
Target:  5'- aGCGCGAUACGGCUguccuucaccaucGAcGGCGAgcgcaaacggccgCUGCu -3'
miRNA:   3'- gCGCGCUGUGCCGG-------------UU-CCGUUa------------GAUG- -5'
26633 5' -55.1 NC_005808.1 + 34084 0.68 0.504873
Target:  5'- gGCGCGACacgACGGUCAcGGCGAc---- -3'
miRNA:   3'- gCGCGCUG---UGCCGGUuCCGUUagaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.