miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26634 3' -57.8 NC_005808.1 + 1294 1.08 0.000497
Target:  5'- cACCGCUUUCGACCGCCUCAUCGGCCAu -3'
miRNA:   3'- -UGGCGAAAGCUGGCGGAGUAGCCGGU- -5'
26634 3' -57.8 NC_005808.1 + 5714 0.66 0.51972
Target:  5'- uACCGCUgguuuCCGCCgugUA-CGGCCAc -3'
miRNA:   3'- -UGGCGAaagcuGGCGGa--GUaGCCGGU- -5'
26634 3' -57.8 NC_005808.1 + 32439 0.66 0.498744
Target:  5'- cCUGCUgggCGGCCgggGCCUCggCGGCg- -3'
miRNA:   3'- uGGCGAaa-GCUGG---CGGAGuaGCCGgu -5'
26634 3' -57.8 NC_005808.1 + 35539 0.66 0.478154
Target:  5'- cCCGCUcaCGuCCGCgaagUCGUCGGCUg -3'
miRNA:   3'- uGGCGAaaGCuGGCGg---AGUAGCCGGu -5'
26634 3' -57.8 NC_005808.1 + 31093 0.67 0.438292
Target:  5'- cCCGCg--CGAUUGCCUCGgcCGGCa- -3'
miRNA:   3'- uGGCGaaaGCUGGCGGAGUa-GCCGgu -5'
26634 3' -57.8 NC_005808.1 + 34439 0.68 0.39126
Target:  5'- uUCGUgcgCGGCCGugcCCUCGUCGGCgAa -3'
miRNA:   3'- uGGCGaaaGCUGGC---GGAGUAGCCGgU- -5'
26634 3' -57.8 NC_005808.1 + 16326 0.66 0.51972
Target:  5'- gGCCGCgcgCGAggccaacgccauCCGCCaUAUCGuGCCGc -3'
miRNA:   3'- -UGGCGaaaGCU------------GGCGGaGUAGC-CGGU- -5'
26634 3' -57.8 NC_005808.1 + 19829 0.66 0.51972
Target:  5'- --aGUgaa-GACCGCCUCGU-GGCCGg -3'
miRNA:   3'- uggCGaaagCUGGCGGAGUAgCCGGU- -5'
26634 3' -57.8 NC_005808.1 + 16721 0.66 0.468017
Target:  5'- aACCGa--UCcGCUcCCUCGUCGGCCGg -3'
miRNA:   3'- -UGGCgaaAGcUGGcGGAGUAGCCGGU- -5'
26634 3' -57.8 NC_005808.1 + 14659 0.69 0.331197
Target:  5'- cACUGCUgaaaagcggaUCGGCCGCCggCAUCaGCCc -3'
miRNA:   3'- -UGGCGAa---------AGCUGGCGGa-GUAGcCGGu -5'
26634 3' -57.8 NC_005808.1 + 28082 0.71 0.238342
Target:  5'- cGCCGacaugaUCGGCuucuuccagCGCCUCAUCGGCUAc -3'
miRNA:   3'- -UGGCgaa---AGCUG---------GCGGAGUAGCCGGU- -5'
26634 3' -57.8 NC_005808.1 + 36979 0.7 0.292618
Target:  5'- aGCUGCUUgcCGGCCuuguccuugGCCUUGUCGGUCGg -3'
miRNA:   3'- -UGGCGAAa-GCUGG---------CGGAGUAGCCGGU- -5'
26634 3' -57.8 NC_005808.1 + 23174 0.66 0.509187
Target:  5'- uACCGCUgUCGccgugggcGCCGCCguuggCGUCGGg-- -3'
miRNA:   3'- -UGGCGAaAGC--------UGGCGGa----GUAGCCggu -5'
26634 3' -57.8 NC_005808.1 + 33053 0.71 0.238342
Target:  5'- cCCGCgugcugUCGugCGCUUCAUCGGgUCGc -3'
miRNA:   3'- uGGCGaa----AGCugGCGGAGUAGCC-GGU- -5'
26634 3' -57.8 NC_005808.1 + 3585 0.7 0.307615
Target:  5'- cACCGauccgCGGCCGCCagUGUUGGCCGu -3'
miRNA:   3'- -UGGCgaaa-GCUGGCGGa-GUAGCCGGU- -5'
26634 3' -57.8 NC_005808.1 + 36217 0.67 0.41625
Target:  5'- cGCCGCgg-CGGCCGaCCUgGUguaacccagcgcccCGGCCu -3'
miRNA:   3'- -UGGCGaaaGCUGGC-GGAgUA--------------GCCGGu -5'
26634 3' -57.8 NC_005808.1 + 8554 0.67 0.409678
Target:  5'- gGCCGCgcUCGACCucauccuggGCgUCGUaGGCCGc -3'
miRNA:   3'- -UGGCGaaAGCUGG---------CGgAGUAgCCGGU- -5'
26634 3' -57.8 NC_005808.1 + 15590 0.67 0.409678
Target:  5'- cGCUGCggaUGcACCGCgC-CAUCGGCCAg -3'
miRNA:   3'- -UGGCGaaaGC-UGGCG-GaGUAGCCGGU- -5'
26634 3' -57.8 NC_005808.1 + 28558 0.68 0.39126
Target:  5'- gGCCGCcggccaucgCGGCgCGCa-CGUCGGCCAc -3'
miRNA:   3'- -UGGCGaaa------GCUG-GCGgaGUAGCCGGU- -5'
26634 3' -57.8 NC_005808.1 + 19616 0.69 0.331197
Target:  5'- uGCCGUccggggUCaugcgGGCCGCgaCAUCGGCCAg -3'
miRNA:   3'- -UGGCGaa----AG-----CUGGCGgaGUAGCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.