miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26635 5' -58.6 NC_005808.1 + 27530 0.66 0.424173
Target:  5'- uGCgUGCGCGGCgcgcuGGCAUaccaGCGC-CAGGg -3'
miRNA:   3'- -UGgACGCGCCG-----UCGUAg---UGCGcGUUU- -5'
26635 5' -58.6 NC_005808.1 + 9628 0.66 0.424173
Target:  5'- gGCCUucaaGuCGCGGUacacguugAGCAgcCACGCGCGGAa -3'
miRNA:   3'- -UGGA----C-GCGCCG--------UCGUa-GUGCGCGUUU- -5'
26635 5' -58.6 NC_005808.1 + 26117 0.66 0.418373
Target:  5'- cGCCaUGCcggcauguguucgucGCGGCAG-AUUugGCGCAGc -3'
miRNA:   3'- -UGG-ACG---------------CGCCGUCgUAGugCGCGUUu -5'
26635 5' -58.6 NC_005808.1 + 13448 0.66 0.414533
Target:  5'- cGCCaGCuuGGCGGCcUCGgGCGCGGu -3'
miRNA:   3'- -UGGaCGcgCCGUCGuAGUgCGCGUUu -5'
26635 5' -58.6 NC_005808.1 + 39823 0.66 0.411667
Target:  5'- cACCUGCGCaacgucgaggugucGGCAGUGgucggCACGCcCGAGc -3'
miRNA:   3'- -UGGACGCG--------------CCGUCGUa----GUGCGcGUUU- -5'
26635 5' -58.6 NC_005808.1 + 17754 0.66 0.405029
Target:  5'- aACCccagGUGUGcaguucgaGCAGCgaGUCGCGCGCGAAc -3'
miRNA:   3'- -UGGa---CGCGC--------CGUCG--UAGUGCGCGUUU- -5'
26635 5' -58.6 NC_005808.1 + 32402 0.66 0.395663
Target:  5'- gACCUGgGCGGCGGuUGUCGgGaCGCc-- -3'
miRNA:   3'- -UGGACgCGCCGUC-GUAGUgC-GCGuuu -5'
26635 5' -58.6 NC_005808.1 + 28620 0.66 0.395663
Target:  5'- aACCggGCGCGGaugaggccggcCAGUucCGCGCGCAGu -3'
miRNA:   3'- -UGGa-CGCGCC-----------GUCGuaGUGCGCGUUu -5'
26635 5' -58.6 NC_005808.1 + 11492 0.66 0.395663
Target:  5'- cGCCUGCGacaccgcaaagGGCAGCGccugcgCugGCGUGAGg -3'
miRNA:   3'- -UGGACGCg----------CCGUCGUa-----GugCGCGUUU- -5'
26635 5' -58.6 NC_005808.1 + 34237 0.66 0.38919
Target:  5'- uCgaGCGCGGCggcgcaggagguacuGGCAUgagcacgCACGCGCAAc -3'
miRNA:   3'- uGgaCGCGCCG---------------UCGUA-------GUGCGCGUUu -5'
26635 5' -58.6 NC_005808.1 + 35566 0.66 0.386438
Target:  5'- cGCCUGCuGCaacaGGCGGCAcaaacgcccaUCACGCGa--- -3'
miRNA:   3'- -UGGACG-CG----CCGUCGU----------AGUGCGCguuu -5'
26635 5' -58.6 NC_005808.1 + 26366 0.66 0.377356
Target:  5'- uGCCUGUccGUugauGGCAucCAUCGCGCGCGAu -3'
miRNA:   3'- -UGGACG--CG----CCGUc-GUAGUGCGCGUUu -5'
26635 5' -58.6 NC_005808.1 + 22617 0.66 0.376456
Target:  5'- cGCCccgcGCGCGGCAGCAgguagUCGCugauuuccuuccaGUGCGAc -3'
miRNA:   3'- -UGGa---CGCGCCGUCGU-----AGUG-------------CGCGUUu -5'
26635 5' -58.6 NC_005808.1 + 36179 0.67 0.368419
Target:  5'- cGCC-GCGCaGGCccGCAuUCACGCGCu-- -3'
miRNA:   3'- -UGGaCGCG-CCGu-CGU-AGUGCGCGuuu -5'
26635 5' -58.6 NC_005808.1 + 1102 0.67 0.368419
Target:  5'- gGCCgUGuCGC-GCGGCAUguCGCGCAu- -3'
miRNA:   3'- -UGG-AC-GCGcCGUCGUAguGCGCGUuu -5'
26635 5' -58.6 NC_005808.1 + 27487 0.67 0.368419
Target:  5'- cGCCggGCGCGGUGcGCcagGCGCGCGAc -3'
miRNA:   3'- -UGGa-CGCGCCGU-CGuagUGCGCGUUu -5'
26635 5' -58.6 NC_005808.1 + 5578 0.67 0.367533
Target:  5'- gGCCgGCGUguccuacgacuuuGGCAGCAUCGC-CGUAc- -3'
miRNA:   3'- -UGGaCGCG-------------CCGUCGUAGUGcGCGUuu -5'
26635 5' -58.6 NC_005808.1 + 12211 0.67 0.363127
Target:  5'- cGCCUacgcggaagcgcagcGCGUGGC-GCGUCGCGC-CAAc -3'
miRNA:   3'- -UGGA---------------CGCGCCGuCGUAGUGCGcGUUu -5'
26635 5' -58.6 NC_005808.1 + 6809 0.67 0.359628
Target:  5'- gACCUuuccgcuauugaGCGCGGCGGCccaGCGCaGCGGc -3'
miRNA:   3'- -UGGA------------CGCGCCGUCGuagUGCG-CGUUu -5'
26635 5' -58.6 NC_005808.1 + 6342 0.67 0.359628
Target:  5'- gACCUGUuCGGCcuGCccaGCGCGCAGAu -3'
miRNA:   3'- -UGGACGcGCCGu-CGuagUGCGCGUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.