Results 21 - 28 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26636 | 3' | -57.7 | NC_005808.1 | + | 8170 | 0.66 | 0.520243 |
Target: 5'- cCUGCGCGUgcgcccGGaUGCUGCC-GGCGAu- -3' miRNA: 3'- cGACGCGCA------CC-ACGAUGGgCUGCUcc -5' |
|||||||
26636 | 3' | -57.7 | NC_005808.1 | + | 7157 | 0.66 | 0.530739 |
Target: 5'- -gUGCGCGUGG-GC-GCgCCGugGguAGGc -3' miRNA: 3'- cgACGCGCACCaCGaUG-GGCugC--UCC- -5' |
|||||||
26636 | 3' | -57.7 | NC_005808.1 | + | 5469 | 0.67 | 0.449382 |
Target: 5'- cGCcGgGCGgcgaGGUGUUG-CCGAUGGGGg -3' miRNA: 3'- -CGaCgCGCa---CCACGAUgGGCUGCUCC- -5' |
|||||||
26636 | 3' | -57.7 | NC_005808.1 | + | 4811 | 0.66 | 0.551954 |
Target: 5'- cGCUGCGgGau-UGCUGgCCGGCGAcaGGu -3' miRNA: 3'- -CGACGCgCaccACGAUgGGCUGCU--CC- -5' |
|||||||
26636 | 3' | -57.7 | NC_005808.1 | + | 4124 | 0.66 | 0.530739 |
Target: 5'- cGCUGCaGCGU--UGCUuCCCGGCGcauaguGGa -3' miRNA: 3'- -CGACG-CGCAccACGAuGGGCUGCu-----CC- -5' |
|||||||
26636 | 3' | -57.7 | NC_005808.1 | + | 2283 | 1.12 | 0.000266 |
Target: 5'- uGCUGCGCGUGGUGCUACCCGACGAGGg -3' miRNA: 3'- -CGACGCGCACCACGAUGGGCUGCUCC- -5' |
|||||||
26636 | 3' | -57.7 | NC_005808.1 | + | 1708 | 0.66 | 0.562658 |
Target: 5'- --cGC-CGUGGgccgGCgugCCGGCGAGGg -3' miRNA: 3'- cgaCGcGCACCa---CGaugGGCUGCUCC- -5' |
|||||||
26636 | 3' | -57.7 | NC_005808.1 | + | 1670 | 0.68 | 0.439691 |
Target: 5'- uUUGCGCGUGaUGCUGCC--GCGcAGGu -3' miRNA: 3'- cGACGCGCACcACGAUGGgcUGC-UCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home