miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26637 5' -51.6 NC_005808.1 + 2627 1.11 0.001338
Target:  5'- aCUCAAAGCCGGCAAUUACGAGCGCGGc -3'
miRNA:   3'- -GAGUUUCGGCCGUUAAUGCUCGCGCC- -5'
26637 5' -51.6 NC_005808.1 + 23566 0.83 0.10586
Target:  5'- -aCAucGCCGGCAggUGCGGGCGgGGg -3'
miRNA:   3'- gaGUuuCGGCCGUuaAUGCUCGCgCC- -5'
26637 5' -51.6 NC_005808.1 + 31100 0.82 0.12992
Target:  5'- cCUCGgugcAGGCCGGCGAguggUGCGAGauaGCGGg -3'
miRNA:   3'- -GAGU----UUCGGCCGUUa---AUGCUCg--CGCC- -5'
26637 5' -51.6 NC_005808.1 + 17288 0.81 0.163539
Target:  5'- -aCGAAGCCGGCGcc-GCGGGCGCGc -3'
miRNA:   3'- gaGUUUCGGCCGUuaaUGCUCGCGCc -5'
26637 5' -51.6 NC_005808.1 + 38629 0.79 0.204781
Target:  5'- uUCAAAGCCGGCcgcgGCGAGCGgcaGGc -3'
miRNA:   3'- gAGUUUCGGCCGuuaaUGCUCGCg--CC- -5'
26637 5' -51.6 NC_005808.1 + 32594 0.78 0.244002
Target:  5'- aUCcuGGCCGGCAucaccagccugcACGGGCGCGGa -3'
miRNA:   3'- gAGuuUCGGCCGUuaa---------UGCUCGCGCC- -5'
26637 5' -51.6 NC_005808.1 + 26041 0.75 0.356532
Target:  5'- aUCAAAGCCcGCGcg-GCGGGCGCGc -3'
miRNA:   3'- gAGUUUCGGcCGUuaaUGCUCGCGCc -5'
26637 5' -51.6 NC_005808.1 + 18649 0.75 0.374521
Target:  5'- uCUCGGacGGCCaGGCcGUcaccGCGAGCGCGGc -3'
miRNA:   3'- -GAGUU--UCGG-CCGuUAa---UGCUCGCGCC- -5'
26637 5' -51.6 NC_005808.1 + 20834 0.75 0.347768
Target:  5'- ----cAGCCGcGCGAUgaguCGAGCGCGGc -3'
miRNA:   3'- gaguuUCGGC-CGUUAau--GCUCGCGCC- -5'
26637 5' -51.6 NC_005808.1 + 23500 0.72 0.483721
Target:  5'- uCUCGAccuG-CGGCAGUUccGCGAGCGCGc -3'
miRNA:   3'- -GAGUUu--CgGCCGUUAA--UGCUCGCGCc -5'
26637 5' -51.6 NC_005808.1 + 13251 0.72 0.51611
Target:  5'- -aCAAcGCCGGcCAAggGCGcccAGCGCGGc -3'
miRNA:   3'- gaGUUuCGGCC-GUUaaUGC---UCGCGCC- -5'
26637 5' -51.6 NC_005808.1 + 16496 0.71 0.571857
Target:  5'- uUCAAcgccGCCGGCGAUUACcc-CGCGGc -3'
miRNA:   3'- gAGUUu---CGGCCGUUAAUGcucGCGCC- -5'
26637 5' -51.6 NC_005808.1 + 27501 0.71 0.549338
Target:  5'- -cCAGGGCCuGCGGccgcCGGGCGCGGu -3'
miRNA:   3'- gaGUUUCGGcCGUUaau-GCUCGCGCC- -5'
26637 5' -51.6 NC_005808.1 + 37088 0.71 0.548219
Target:  5'- gUCGAGGCCGGCAuacuccacgaAUUugGcccacucGGCGgGGu -3'
miRNA:   3'- gAGUUUCGGCCGU----------UAAugC-------UCGCgCC- -5'
26637 5' -51.6 NC_005808.1 + 40413 0.71 0.538181
Target:  5'- -cCuuGGCCGGCAGUU-CGAcGCGCa- -3'
miRNA:   3'- gaGuuUCGGCCGUUAAuGCU-CGCGcc -5'
26637 5' -51.6 NC_005808.1 + 23983 0.71 0.583201
Target:  5'- aUCAcgccuauGCCGGCAuggaagccGCGGGCGUGGc -3'
miRNA:   3'- gAGUuu-----CGGCCGUuaa-----UGCUCGCGCC- -5'
26637 5' -51.6 NC_005808.1 + 8065 0.71 0.583201
Target:  5'- uUCGu-GCguuCGGCAA--ACGAGCGCGGc -3'
miRNA:   3'- gAGUuuCG---GCCGUUaaUGCUCGCGCC- -5'
26637 5' -51.6 NC_005808.1 + 1706 0.71 0.583201
Target:  5'- uUCGccguGGGCCGGCGugccgGCGAGgGCGu -3'
miRNA:   3'- gAGU----UUCGGCCGUuaa--UGCUCgCGCc -5'
26637 5' -51.6 NC_005808.1 + 28664 0.71 0.549338
Target:  5'- aUCGGuGCCGGCGGccuCGccAGCGCGGc -3'
miRNA:   3'- gAGUUuCGGCCGUUaauGC--UCGCGCC- -5'
26637 5' -51.6 NC_005808.1 + 14189 0.71 0.549338
Target:  5'- -gCGAAGCCGGUguccuugucauaGGUcagGCGcAGCGCGGc -3'
miRNA:   3'- gaGUUUCGGCCG------------UUAa--UGC-UCGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.