miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26637 5' -51.6 NC_005808.1 + 34867 0.66 0.860236
Target:  5'- -aCAgcAAGCCGGCcgc--CGAGCGUGc -3'
miRNA:   3'- gaGU--UUCGGCCGuuaauGCUCGCGCc -5'
26637 5' -51.6 NC_005808.1 + 27824 0.66 0.860236
Target:  5'- gUCcGAGCCGGaCGAgggcaGCGAguuGCGCGa -3'
miRNA:   3'- gAGuUUCGGCC-GUUaa---UGCU---CGCGCc -5'
26637 5' -51.6 NC_005808.1 + 38477 0.66 0.860236
Target:  5'- cCUCGAuGGCgGGCAuGUUggccGCGAGCacgucGCGGc -3'
miRNA:   3'- -GAGUU-UCGgCCGU-UAA----UGCUCG-----CGCC- -5'
26637 5' -51.6 NC_005808.1 + 6625 0.66 0.860236
Target:  5'- cCUCAAGGaugcgcugacgcCUGGCGAUU-CGGGCGaCGa -3'
miRNA:   3'- -GAGUUUC------------GGCCGUUAAuGCUCGC-GCc -5'
26637 5' -51.6 NC_005808.1 + 24309 0.66 0.851537
Target:  5'- --uGAGGUCGGCGAgcagccGCGGGUcagGCGGc -3'
miRNA:   3'- gagUUUCGGCCGUUaa----UGCUCG---CGCC- -5'
26637 5' -51.6 NC_005808.1 + 13308 0.66 0.851537
Target:  5'- -cCGGGGCCGGCGuuguagGCG-GCGUaGGc -3'
miRNA:   3'- gaGUUUCGGCCGUuaa---UGCuCGCG-CC- -5'
26637 5' -51.6 NC_005808.1 + 39945 0.66 0.851537
Target:  5'- -aCAcguuGGCCGGacgcu-UGAGCGCGGc -3'
miRNA:   3'- gaGUu---UCGGCCguuaauGCUCGCGCC- -5'
26637 5' -51.6 NC_005808.1 + 25387 0.66 0.851537
Target:  5'- -aCAAucCCGGCG---ACGAGCGCcGGu -3'
miRNA:   3'- gaGUUucGGCCGUuaaUGCUCGCG-CC- -5'
26637 5' -51.6 NC_005808.1 + 23959 0.66 0.842589
Target:  5'- -gCGAGGUCGGCAuUUGcCGAuucauGCGCGu -3'
miRNA:   3'- gaGUUUCGGCCGUuAAU-GCU-----CGCGCc -5'
26637 5' -51.6 NC_005808.1 + 18219 0.66 0.842589
Target:  5'- -aCAGGGCuauuuCGGCAAgcugcGCGAGC-CGGg -3'
miRNA:   3'- gaGUUUCG-----GCCGUUaa---UGCUCGcGCC- -5'
26637 5' -51.6 NC_005808.1 + 330 0.66 0.833401
Target:  5'- gUC-AGGCUGGCGGUgGCGucGCGCa- -3'
miRNA:   3'- gAGuUUCGGCCGUUAaUGCu-CGCGcc -5'
26637 5' -51.6 NC_005808.1 + 38348 0.66 0.832469
Target:  5'- -aCAGcuuGCCGGCGucauccaGUUGCGGGCuGgGGu -3'
miRNA:   3'- gaGUUu--CGGCCGU-------UAAUGCUCG-CgCC- -5'
26637 5' -51.6 NC_005808.1 + 4032 0.66 0.823983
Target:  5'- gUCAu-GCCGcGCGGgu-CGAGCGCa- -3'
miRNA:   3'- gAGUuuCGGC-CGUUaauGCUCGCGcc -5'
26637 5' -51.6 NC_005808.1 + 16647 0.66 0.823983
Target:  5'- -gCAGGuGCCGGCcg--ACGAGggaGCGGa -3'
miRNA:   3'- gaGUUU-CGGCCGuuaaUGCUCg--CGCC- -5'
26637 5' -51.6 NC_005808.1 + 41681 0.67 0.814346
Target:  5'- -cCAAGGCaGGC---UACGAaaGCGCGGu -3'
miRNA:   3'- gaGUUUCGgCCGuuaAUGCU--CGCGCC- -5'
26637 5' -51.6 NC_005808.1 + 28211 0.67 0.814346
Target:  5'- gUCcAGGUCGGCcacgccgACGAccacGCGCGGg -3'
miRNA:   3'- gAGuUUCGGCCGuuaa---UGCU----CGCGCC- -5'
26637 5' -51.6 NC_005808.1 + 34117 0.67 0.814346
Target:  5'- gCUCGAcAGCCGcGcCGAUgGCGGGCaGCGa -3'
miRNA:   3'- -GAGUU-UCGGC-C-GUUAaUGCUCG-CGCc -5'
26637 5' -51.6 NC_005808.1 + 31907 0.67 0.814346
Target:  5'- aUCGAGGCCgagugccugcGGCGuuu-CGAGCGCu- -3'
miRNA:   3'- gAGUUUCGG----------CCGUuaauGCUCGCGcc -5'
26637 5' -51.6 NC_005808.1 + 9726 0.67 0.81337
Target:  5'- cCUCGAAGCCgcgGGCGAacUGCucgugguGGGCGCGc -3'
miRNA:   3'- -GAGUUUCGG---CCGUUa-AUG-------CUCGCGCc -5'
26637 5' -51.6 NC_005808.1 + 25569 0.67 0.804501
Target:  5'- cCUCAucGCgGGCcugacccugaccAAgcACGAGCGCGc -3'
miRNA:   3'- -GAGUuuCGgCCG------------UUaaUGCUCGCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.