Results 1 - 20 of 110 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26640 | 3' | -56.4 | NC_005808.1 | + | 4233 | 1.1 | 0.000555 |
Target: 5'- gCUACACCUCGACCACGGCGCGCAAGGu -3' miRNA: 3'- -GAUGUGGAGCUGGUGCCGCGCGUUCC- -5' |
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26640 | 3' | -56.4 | NC_005808.1 | + | 22187 | 0.8 | 0.079696 |
Target: 5'- --cCugUUCGACCGCGGCGCGCu-GGa -3' miRNA: 3'- gauGugGAGCUGGUGCCGCGCGuuCC- -5' |
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26640 | 3' | -56.4 | NC_005808.1 | + | 35958 | 0.79 | 0.097376 |
Target: 5'- -cACACCUUGuCCugGGCGCGCAu-- -3' miRNA: 3'- gaUGUGGAGCuGGugCCGCGCGUucc -5' |
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26640 | 3' | -56.4 | NC_005808.1 | + | 228 | 0.79 | 0.103073 |
Target: 5'- -cGCACCUCGGCauUGGCGCGCuGGGu -3' miRNA: 3'- gaUGUGGAGCUGguGCCGCGCGuUCC- -5' |
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26640 | 3' | -56.4 | NC_005808.1 | + | 14661 | 0.76 | 0.144349 |
Target: 5'- uUGCACCUUGGCCugGGUGCGgGu-- -3' miRNA: 3'- gAUGUGGAGCUGGugCCGCGCgUucc -5' |
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26640 | 3' | -56.4 | NC_005808.1 | + | 24161 | 0.76 | 0.161179 |
Target: 5'- -aGCGCCUCGACgGCuGCGCGCuucGGc -3' miRNA: 3'- gaUGUGGAGCUGgUGcCGCGCGuu-CC- -5' |
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26640 | 3' | -56.4 | NC_005808.1 | + | 13153 | 0.75 | 0.174942 |
Target: 5'- aCUGCGCCUCGAUguCGGCcagugucggccGCGCuGGGc -3' miRNA: 3'- -GAUGUGGAGCUGguGCCG-----------CGCGuUCC- -5' |
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26640 | 3' | -56.4 | NC_005808.1 | + | 37117 | 0.74 | 0.202364 |
Target: 5'- -gGCACCUCGACCagaccaucaacgaccGCGGCGUGau-GGu -3' miRNA: 3'- gaUGUGGAGCUGG---------------UGCCGCGCguuCC- -5' |
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26640 | 3' | -56.4 | NC_005808.1 | + | 5607 | 0.74 | 0.205631 |
Target: 5'- --cCGCCUCGuugguaGCCACGGCGUcgauguugGCGAGGu -3' miRNA: 3'- gauGUGGAGC------UGGUGCCGCG--------CGUUCC- -5' |
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26640 | 3' | -56.4 | NC_005808.1 | + | 36849 | 0.74 | 0.22266 |
Target: 5'- -gGCGCaCUCGcuGCC-CGGCGCGCuGGGc -3' miRNA: 3'- gaUGUG-GAGC--UGGuGCCGCGCGuUCC- -5' |
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26640 | 3' | -56.4 | NC_005808.1 | + | 8144 | 0.74 | 0.225018 |
Target: 5'- uUGgGCCUcccauaucaaggcagCGACCugGGCGCGCGucauGGa -3' miRNA: 3'- gAUgUGGA---------------GCUGGugCCGCGCGUu---CC- -5' |
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26640 | 3' | -56.4 | NC_005808.1 | + | 34606 | 0.74 | 0.225018 |
Target: 5'- -cGCugCUCGACCAUcaguucaccgcccaaGGCGCGCAc-- -3' miRNA: 3'- gaUGugGAGCUGGUG---------------CCGCGCGUucc -5' |
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26640 | 3' | -56.4 | NC_005808.1 | + | 8981 | 0.73 | 0.228597 |
Target: 5'- -aACGCCUCGAUUuccuCGcCGCGCGGGGg -3' miRNA: 3'- gaUGUGGAGCUGGu---GCcGCGCGUUCC- -5' |
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26640 | 3' | -56.4 | NC_005808.1 | + | 14451 | 0.73 | 0.232832 |
Target: 5'- gCUACGCCUaCGuuCCGCGGCGCGgAugcccccgccuuccAGGa -3' miRNA: 3'- -GAUGUGGA-GCu-GGUGCCGCGCgU--------------UCC- -5' |
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26640 | 3' | -56.4 | NC_005808.1 | + | 20007 | 0.73 | 0.234667 |
Target: 5'- ---uGCCUCGuCCACGGC-CGaCAAGGa -3' miRNA: 3'- gaugUGGAGCuGGUGCCGcGC-GUUCC- -5' |
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26640 | 3' | -56.4 | NC_005808.1 | + | 1432 | 0.73 | 0.240872 |
Target: 5'- uUGCGCUUCGGUCGcCGGaUGCGCAAGGc -3' miRNA: 3'- gAUGUGGAGCUGGU-GCC-GCGCGUUCC- -5' |
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26640 | 3' | -56.4 | NC_005808.1 | + | 15812 | 0.73 | 0.240872 |
Target: 5'- uUAC-CCUCGGCCACcacCGCGCAGGa -3' miRNA: 3'- gAUGuGGAGCUGGUGcc-GCGCGUUCc -5' |
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26640 | 3' | -56.4 | NC_005808.1 | + | 35432 | 0.72 | 0.295522 |
Target: 5'- cCUGCaACUUCGGCCACuGGCGCGgGc-- -3' miRNA: 3'- -GAUG-UGGAGCUGGUG-CCGCGCgUucc -5' |
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26640 | 3' | -56.4 | NC_005808.1 | + | 38061 | 0.72 | 0.295522 |
Target: 5'- -aACugCUCGGCCuCGGCGaugaugucgGCGGGGa -3' miRNA: 3'- gaUGugGAGCUGGuGCCGCg--------CGUUCC- -5' |
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26640 | 3' | -56.4 | NC_005808.1 | + | 9721 | 0.71 | 0.302994 |
Target: 5'- aUACGCCUCGaaGCCGCGGgcgaacugcuCGUGguGGGc -3' miRNA: 3'- gAUGUGGAGC--UGGUGCC----------GCGCguUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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