Results 1 - 20 of 110 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26640 | 3' | -56.4 | NC_005808.1 | + | 2035 | 0.69 | 0.412242 |
Target: 5'- -cGCGCaggCGAUagaaCACGGCGCGCAauuccucGGGg -3' miRNA: 3'- gaUGUGga-GCUG----GUGCCGCGCGU-------UCC- -5' |
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26640 | 3' | -56.4 | NC_005808.1 | + | 33910 | 0.71 | 0.326278 |
Target: 5'- uCUGCGCggCGcacACCugGGCGCGCAGc- -3' miRNA: 3'- -GAUGUGgaGC---UGGugCCGCGCGUUcc -5' |
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26640 | 3' | -56.4 | NC_005808.1 | + | 27504 | 0.71 | 0.326278 |
Target: 5'- -gGCgGCCUCGGCCGCcagcuucucGGCGCGguCGGGGu -3' miRNA: 3'- gaUG-UGGAGCUGGUG---------CCGCGC--GUUCC- -5' |
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26640 | 3' | -56.4 | NC_005808.1 | + | 8619 | 0.71 | 0.326278 |
Target: 5'- uUGCGCuuCUCGGCCgcuGCGGUG-GCGAGGu -3' miRNA: 3'- gAUGUG--GAGCUGG---UGCCGCgCGUUCC- -5' |
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26640 | 3' | -56.4 | NC_005808.1 | + | 10576 | 0.7 | 0.385642 |
Target: 5'- -aGCGCCUCGGgcguaguacCCA-GGCGCGCAGc- -3' miRNA: 3'- gaUGUGGAGCU---------GGUgCCGCGCGUUcc -5' |
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26640 | 3' | -56.4 | NC_005808.1 | + | 12534 | 0.7 | 0.385642 |
Target: 5'- gUGCugCUCGACCuCGGCGuCGguGa- -3' miRNA: 3'- gAUGugGAGCUGGuGCCGC-GCguUcc -5' |
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26640 | 3' | -56.4 | NC_005808.1 | + | 8116 | 0.7 | 0.385642 |
Target: 5'- cCUGCACCgcgCGGCCgGCguugguugugGGCGUGCGGGu -3' miRNA: 3'- -GAUGUGGa--GCUGG-UG----------CCGCGCGUUCc -5' |
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26640 | 3' | -56.4 | NC_005808.1 | + | 7080 | 0.7 | 0.394686 |
Target: 5'- -gACGCCgCGGCCuacccACGGCGCGCc--- -3' miRNA: 3'- gaUGUGGaGCUGG-----UGCCGCGCGuucc -5' |
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26640 | 3' | -56.4 | NC_005808.1 | + | 33943 | 0.7 | 0.394686 |
Target: 5'- gCUGCACacagCGAgUACGGCGCGgccuGGGg -3' miRNA: 3'- -GAUGUGga--GCUgGUGCCGCGCgu--UCC- -5' |
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26640 | 3' | -56.4 | NC_005808.1 | + | 8727 | 0.71 | 0.326278 |
Target: 5'- -cGCACCUUGAgccgggacaCCAgGGCGCGCGc-- -3' miRNA: 3'- gaUGUGGAGCU---------GGUgCCGCGCGUucc -5' |
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26640 | 3' | -56.4 | NC_005808.1 | + | 7960 | 0.71 | 0.310611 |
Target: 5'- uUGC-CCgUGGCCuCGGCGCGCAucGGGu -3' miRNA: 3'- gAUGuGGaGCUGGuGCCGCGCGU--UCC- -5' |
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26640 | 3' | -56.4 | NC_005808.1 | + | 9721 | 0.71 | 0.302994 |
Target: 5'- aUACGCCUCGaaGCCGCGGgcgaacugcuCGUGguGGGc -3' miRNA: 3'- gAUGUGGAGC--UGGUGCC----------GCGCguUCC- -5' |
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26640 | 3' | -56.4 | NC_005808.1 | + | 14661 | 0.76 | 0.144349 |
Target: 5'- uUGCACCUUGGCCugGGUGCGgGu-- -3' miRNA: 3'- gAUGUGGAGCUGGugCCGCGCgUucc -5' |
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26640 | 3' | -56.4 | NC_005808.1 | + | 24161 | 0.76 | 0.161179 |
Target: 5'- -aGCGCCUCGACgGCuGCGCGCuucGGc -3' miRNA: 3'- gaUGUGGAGCUGgUGcCGCGCGuu-CC- -5' |
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26640 | 3' | -56.4 | NC_005808.1 | + | 13153 | 0.75 | 0.174942 |
Target: 5'- aCUGCGCCUCGAUguCGGCcagugucggccGCGCuGGGc -3' miRNA: 3'- -GAUGUGGAGCUGguGCCG-----------CGCGuUCC- -5' |
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26640 | 3' | -56.4 | NC_005808.1 | + | 37117 | 0.74 | 0.202364 |
Target: 5'- -gGCACCUCGACCagaccaucaacgaccGCGGCGUGau-GGu -3' miRNA: 3'- gaUGUGGAGCUGG---------------UGCCGCGCguuCC- -5' |
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26640 | 3' | -56.4 | NC_005808.1 | + | 5607 | 0.74 | 0.205631 |
Target: 5'- --cCGCCUCGuugguaGCCACGGCGUcgauguugGCGAGGu -3' miRNA: 3'- gauGUGGAGC------UGGUGCCGCG--------CGUUCC- -5' |
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26640 | 3' | -56.4 | NC_005808.1 | + | 36849 | 0.74 | 0.22266 |
Target: 5'- -gGCGCaCUCGcuGCC-CGGCGCGCuGGGc -3' miRNA: 3'- gaUGUG-GAGC--UGGuGCCGCGCGuUCC- -5' |
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26640 | 3' | -56.4 | NC_005808.1 | + | 8981 | 0.73 | 0.228597 |
Target: 5'- -aACGCCUCGAUUuccuCGcCGCGCGGGGg -3' miRNA: 3'- gaUGUGGAGCUGGu---GCcGCGCGUUCC- -5' |
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26640 | 3' | -56.4 | NC_005808.1 | + | 15812 | 0.73 | 0.240872 |
Target: 5'- uUAC-CCUCGGCCACcacCGCGCAGGa -3' miRNA: 3'- gAUGuGGAGCUGGUGcc-GCGCGUUCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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