miRNA display CGI


Results 1 - 20 of 110 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26640 3' -56.4 NC_005808.1 + 228 0.79 0.103073
Target:  5'- -cGCACCUCGGCauUGGCGCGCuGGGu -3'
miRNA:   3'- gaUGUGGAGCUGguGCCGCGCGuUCC- -5'
26640 3' -56.4 NC_005808.1 + 489 0.67 0.523516
Target:  5'- -gAUGCCUCGgcagcauacugcGCCGCGGCGgcuUGCAGGcGg -3'
miRNA:   3'- gaUGUGGAGC------------UGGUGCCGC---GCGUUC-C- -5'
26640 3' -56.4 NC_005808.1 + 685 0.67 0.534147
Target:  5'- -gACGCCgUGuCCACGGCGCuGCu-GGc -3'
miRNA:   3'- gaUGUGGaGCuGGUGCCGCG-CGuuCC- -5'
26640 3' -56.4 NC_005808.1 + 1307 0.67 0.534147
Target:  5'- -cGCGCCcagggcgaCGGCCACcaGGCcgacaaGCGCGAGGa -3'
miRNA:   3'- gaUGUGGa-------GCUGGUG--CCG------CGCGUUCC- -5'
26640 3' -56.4 NC_005808.1 + 1432 0.73 0.240872
Target:  5'- uUGCGCUUCGGUCGcCGGaUGCGCAAGGc -3'
miRNA:   3'- gAUGUGGAGCUGGU-GCC-GCGCGUUCC- -5'
26640 3' -56.4 NC_005808.1 + 2035 0.69 0.412242
Target:  5'- -cGCGCaggCGAUagaaCACGGCGCGCAauuccucGGGg -3'
miRNA:   3'- gaUGUGga-GCUG----GUGCCGCGCGU-------UCC- -5'
26640 3' -56.4 NC_005808.1 + 4233 1.1 0.000555
Target:  5'- gCUACACCUCGACCACGGCGCGCAAGGu -3'
miRNA:   3'- -GAUGUGGAGCUGGUGCCGCGCGUUCC- -5'
26640 3' -56.4 NC_005808.1 + 4669 0.67 0.55563
Target:  5'- aUugGCCUggcUGACCugGGCGgcauCGCAuaacuAGGa -3'
miRNA:   3'- gAugUGGA---GCUGGugCCGC----GCGU-----UCC- -5'
26640 3' -56.4 NC_005808.1 + 4742 0.69 0.432197
Target:  5'- -cGCGauguUCUCGGCCACGGC-CGCGAu- -3'
miRNA:   3'- gaUGU----GGAGCUGGUGCCGcGCGUUcc -5'
26640 3' -56.4 NC_005808.1 + 5607 0.74 0.205631
Target:  5'- --cCGCCUCGuugguaGCCACGGCGUcgauguugGCGAGGu -3'
miRNA:   3'- gauGUGGAGC------UGGUGCCGCG--------CGUUCC- -5'
26640 3' -56.4 NC_005808.1 + 6702 0.66 0.588294
Target:  5'- -gACACUcCGGCCAa-GCGCGCGAa- -3'
miRNA:   3'- gaUGUGGaGCUGGUgcCGCGCGUUcc -5'
26640 3' -56.4 NC_005808.1 + 7080 0.7 0.394686
Target:  5'- -gACGCCgCGGCCuacccACGGCGCGCc--- -3'
miRNA:   3'- gaUGUGGaGCUGG-----UGCCGCGCGuucc -5'
26640 3' -56.4 NC_005808.1 + 7960 0.71 0.310611
Target:  5'- uUGC-CCgUGGCCuCGGCGCGCAucGGGu -3'
miRNA:   3'- gAUGuGGaGCUGGuGCCGCGCGU--UCC- -5'
26640 3' -56.4 NC_005808.1 + 8116 0.7 0.385642
Target:  5'- cCUGCACCgcgCGGCCgGCguugguugugGGCGUGCGGGu -3'
miRNA:   3'- -GAUGUGGa--GCUGG-UG----------CCGCGCGUUCc -5'
26640 3' -56.4 NC_005808.1 + 8144 0.74 0.225018
Target:  5'- uUGgGCCUcccauaucaaggcagCGACCugGGCGCGCGucauGGa -3'
miRNA:   3'- gAUgUGGA---------------GCUGGugCCGCGCGUu---CC- -5'
26640 3' -56.4 NC_005808.1 + 8316 0.67 0.512965
Target:  5'- -aACACCUgGGCCGCuugaaGCGCAAGc -3'
miRNA:   3'- gaUGUGGAgCUGGUGccg--CGCGUUCc -5'
26640 3' -56.4 NC_005808.1 + 8619 0.71 0.326278
Target:  5'- uUGCGCuuCUCGGCCgcuGCGGUG-GCGAGGu -3'
miRNA:   3'- gAUGUG--GAGCUGG---UGCCGCgCGUUCC- -5'
26640 3' -56.4 NC_005808.1 + 8688 0.68 0.492137
Target:  5'- -cGCACCUCGGCguUGGUGUacugGCcGGGu -3'
miRNA:   3'- gaUGUGGAGCUGguGCCGCG----CGuUCC- -5'
26640 3' -56.4 NC_005808.1 + 8727 0.71 0.326278
Target:  5'- -cGCACCUUGAgccgggacaCCAgGGCGCGCGc-- -3'
miRNA:   3'- gaUGUGGAGCU---------GGUgCCGCGCGUucc -5'
26640 3' -56.4 NC_005808.1 + 8861 0.68 0.451716
Target:  5'- gUugGCCUCGgucGCCACGaaGCGgGCGcGGg -3'
miRNA:   3'- gAugUGGAGC---UGGUGC--CGCgCGUuCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.