miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26641 3' -57.1 NC_005808.1 + 4450 1.12 0.000325
Target:  5'- aUCAAGGCCGACAAGUCGGCCGUCGCCu -3'
miRNA:   3'- -AGUUCCGGCUGUUCAGCCGGCAGCGG- -5'
26641 3' -57.1 NC_005808.1 + 35346 0.8 0.07393
Target:  5'- aCAAGGCCGGCGAcaUCGGCCcG-CGCCa -3'
miRNA:   3'- aGUUCCGGCUGUUc-AGCCGG-CaGCGG- -5'
26641 3' -57.1 NC_005808.1 + 29566 0.78 0.092925
Target:  5'- cUCGGGGUaucgCGuCAGGUCGGCCG-CGCCc -3'
miRNA:   3'- -AGUUCCG----GCuGUUCAGCCGGCaGCGG- -5'
26641 3' -57.1 NC_005808.1 + 24572 0.78 0.092925
Target:  5'- gCGAGGCCGGCcacGGUCgGGCCGUCcggcguguccuuGCCg -3'
miRNA:   3'- aGUUCCGGCUGu--UCAG-CCGGCAG------------CGG- -5'
26641 3' -57.1 NC_005808.1 + 36301 0.78 0.102329
Target:  5'- -gAAGGCCGGggcgcuggguuacacCAGGUCGGCCGcCGCg -3'
miRNA:   3'- agUUCCGGCU---------------GUUCAGCCGGCaGCGg -5'
26641 3' -57.1 NC_005808.1 + 11037 0.77 0.122164
Target:  5'- ---uGGCCGaACAGGUggccgcagugucccCGGCUGUCGCCg -3'
miRNA:   3'- aguuCCGGC-UGUUCA--------------GCCGGCAGCGG- -5'
26641 3' -57.1 NC_005808.1 + 23619 0.77 0.12668
Target:  5'- ----uGCCGGCGAuGUCGGCCGagGCCa -3'
miRNA:   3'- aguucCGGCUGUU-CAGCCGGCagCGG- -5'
26641 3' -57.1 NC_005808.1 + 8784 0.77 0.12668
Target:  5'- aCGcGGCgcaCGAUggGUCGGCCG-CGCCg -3'
miRNA:   3'- aGUuCCG---GCUGuuCAGCCGGCaGCGG- -5'
26641 3' -57.1 NC_005808.1 + 37524 0.76 0.13393
Target:  5'- gCAAcGuGCCGcGCAGG-CGGCCGUCGCUg -3'
miRNA:   3'- aGUU-C-CGGC-UGUUCaGCCGGCAGCGG- -5'
26641 3' -57.1 NC_005808.1 + 6912 0.76 0.137696
Target:  5'- -gGGGGCCuACGAaaaGGCCGUCGCCg -3'
miRNA:   3'- agUUCCGGcUGUUcagCCGGCAGCGG- -5'
26641 3' -57.1 NC_005808.1 + 18545 0.76 0.137696
Target:  5'- aUCAcGGUgGACGAaUCGGCCGaCGCCg -3'
miRNA:   3'- -AGUuCCGgCUGUUcAGCCGGCaGCGG- -5'
26641 3' -57.1 NC_005808.1 + 28883 0.75 0.158023
Target:  5'- cUCGcuGCUGGCGuAGUugcUGGCCGUCGCCg -3'
miRNA:   3'- -AGUucCGGCUGU-UCA---GCCGGCAGCGG- -5'
26641 3' -57.1 NC_005808.1 + 888 0.75 0.166435
Target:  5'- aCcuGGCCGACGuucggcaagggcuGGgcgCGGCgCGUCGCCg -3'
miRNA:   3'- aGuuCCGGCUGU-------------UCa--GCCG-GCAGCGG- -5'
26641 3' -57.1 NC_005808.1 + 13308 0.75 0.170095
Target:  5'- cCGGGGCCGGCGuuguaggcggcguaGGcuuUCGGCagGUCGCCg -3'
miRNA:   3'- aGUUCCGGCUGU--------------UC---AGCCGg-CAGCGG- -5'
26641 3' -57.1 NC_005808.1 + 601 0.74 0.181023
Target:  5'- ---uGGCCGccuGCGGGUCGGCCagcagCGCCg -3'
miRNA:   3'- aguuCCGGC---UGUUCAGCCGGca---GCGG- -5'
26641 3' -57.1 NC_005808.1 + 7708 0.74 0.191026
Target:  5'- gCAAGgaGCCGGCGugGGUCGaGCCG-CGCCc -3'
miRNA:   3'- aGUUC--CGGCUGU--UCAGC-CGGCaGCGG- -5'
26641 3' -57.1 NC_005808.1 + 2593 0.74 0.191026
Target:  5'- gCAAGGCCaGCAGGUUGGCgagGUCGUa -3'
miRNA:   3'- aGUUCCGGcUGUUCAGCCGg--CAGCGg -5'
26641 3' -57.1 NC_005808.1 + 29048 0.73 0.212493
Target:  5'- aCGAGGacuaCGACAccuggcugaaAGUCGGCaUGUCGCUg -3'
miRNA:   3'- aGUUCCg---GCUGU----------UCAGCCG-GCAGCGG- -5'
26641 3' -57.1 NC_005808.1 + 8488 0.73 0.212493
Target:  5'- cUCAAGGCCguaGACAAGcgcaCGGCCcUgGCCg -3'
miRNA:   3'- -AGUUCCGG---CUGUUCa---GCCGGcAgCGG- -5'
26641 3' -57.1 NC_005808.1 + 32325 0.73 0.21475
Target:  5'- aUCAAGGCCGGCgucccgacaaccgccGcccaGGUCGcuGCgGUCGCCg -3'
miRNA:   3'- -AGUUCCGGCUG---------------U----UCAGC--CGgCAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.