miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26641 3' -57.1 NC_005808.1 + 330 0.69 0.414312
Target:  5'- gUC-AGGCUGGCGGuggcGUCgcgcagcaGGCCGUcCGCCa -3'
miRNA:   3'- -AGuUCCGGCUGUU----CAG--------CCGGCA-GCGG- -5'
26641 3' -57.1 NC_005808.1 + 601 0.74 0.181023
Target:  5'- ---uGGCCGccuGCGGGUCGGCCagcagCGCCg -3'
miRNA:   3'- aguuCCGGC---UGUUCAGCCGGca---GCGG- -5'
26641 3' -57.1 NC_005808.1 + 800 0.71 0.275308
Target:  5'- aCcuGGCCGGCGuuGUCGGCaaaGcCGCCc -3'
miRNA:   3'- aGuuCCGGCUGUu-CAGCCGg--CaGCGG- -5'
26641 3' -57.1 NC_005808.1 + 888 0.75 0.166435
Target:  5'- aCcuGGCCGACGuucggcaagggcuGGgcgCGGCgCGUCGCCg -3'
miRNA:   3'- aGuuCCGGCUGU-------------UCa--GCCG-GCAGCGG- -5'
26641 3' -57.1 NC_005808.1 + 1033 0.67 0.524306
Target:  5'- -gAAGGCCacGGCcGG-CGGCagcauGUCGCCg -3'
miRNA:   3'- agUUCCGG--CUGuUCaGCCGg----CAGCGG- -5'
26641 3' -57.1 NC_005808.1 + 1222 0.67 0.482804
Target:  5'- cUCAuGGCCGAUGAGgCGGUCGaaaGCg -3'
miRNA:   3'- -AGUuCCGGCUGUUCaGCCGGCag-CGg -5'
26641 3' -57.1 NC_005808.1 + 1324 0.71 0.304317
Target:  5'- cCAccAGGCCGACAAGcgCGaggaaGCCGUgGUCg -3'
miRNA:   3'- aGU--UCCGGCUGUUCa-GC-----CGGCAgCGG- -5'
26641 3' -57.1 NC_005808.1 + 1410 0.7 0.351288
Target:  5'- gCAAGGCCGccgaccACGGcuuccucgcgcuuGUCggccugguGGCCGUCGCCc -3'
miRNA:   3'- aGUUCCGGC------UGUU-------------CAG--------CCGGCAGCGG- -5'
26641 3' -57.1 NC_005808.1 + 1602 0.69 0.377952
Target:  5'- aCGGGGUCGA-GGGUCGGCCcuUCGUa -3'
miRNA:   3'- aGUUCCGGCUgUUCAGCCGGc-AGCGg -5'
26641 3' -57.1 NC_005808.1 + 2491 0.68 0.423732
Target:  5'- uUCGAGGCCGGCcuG-CuGCCGUacaccuacgcuUGCCg -3'
miRNA:   3'- -AGUUCCGGCUGuuCaGcCGGCA-----------GCGG- -5'
26641 3' -57.1 NC_005808.1 + 2593 0.74 0.191026
Target:  5'- gCAAGGCCaGCAGGUUGGCgagGUCGUa -3'
miRNA:   3'- aGUUCCGGcUGUUCAGCCGg--CAGCGg -5'
26641 3' -57.1 NC_005808.1 + 3592 0.7 0.327577
Target:  5'- cCGcGGCCGcCAGuGUUGGCCGUguauucggaugCGCCa -3'
miRNA:   3'- aGUuCCGGCuGUU-CAGCCGGCA-----------GCGG- -5'
26641 3' -57.1 NC_005808.1 + 3867 0.67 0.493037
Target:  5'- cCAGGcGCCGuCGcuguAGgccgCGcuGCCGUCGCCg -3'
miRNA:   3'- aGUUC-CGGCuGU----UCa---GC--CGGCAGCGG- -5'
26641 3' -57.1 NC_005808.1 + 4269 0.66 0.588837
Target:  5'- gUCAGcGCCGGCAuGGUgaUGGCCGU-GUCg -3'
miRNA:   3'- -AGUUcCGGCUGU-UCA--GCCGGCAgCGG- -5'
26641 3' -57.1 NC_005808.1 + 4383 0.71 0.304317
Target:  5'- gCGAcGGCCGACuuGUCGGCCuugaugaaaGCCg -3'
miRNA:   3'- aGUU-CCGGCUGuuCAGCCGGcag------CGG- -5'
26641 3' -57.1 NC_005808.1 + 4450 1.12 0.000325
Target:  5'- aUCAAGGCCGACAAGUCGGCCGUCGCCu -3'
miRNA:   3'- -AGUUCCGGCUGUUCAGCCGGCAGCGG- -5'
26641 3' -57.1 NC_005808.1 + 4644 0.68 0.451759
Target:  5'- gCAGGGUCGGCAAgaucggacagguuGUUGGCgGgcaccagcgCGCCg -3'
miRNA:   3'- aGUUCCGGCUGUU-------------CAGCCGgCa--------GCGG- -5'
26641 3' -57.1 NC_005808.1 + 4958 0.73 0.236002
Target:  5'- cCGuGGCCGAaaaCGAGgccGCCGUCGCCg -3'
miRNA:   3'- aGUuCCGGCU---GUUCagcCGGCAGCGG- -5'
26641 3' -57.1 NC_005808.1 + 5423 0.69 0.395863
Target:  5'- ----uGUCGAgCAuGUUGGCUGUCGCCa -3'
miRNA:   3'- aguucCGGCU-GUuCAGCCGGCAGCGG- -5'
26641 3' -57.1 NC_005808.1 + 5657 0.67 0.512747
Target:  5'- aCGAGGCgGACAucgacacGGUggCGGCCagcguuggCGCCg -3'
miRNA:   3'- aGUUCCGgCUGU-------UCA--GCCGGca------GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.