miRNA display CGI


Results 21 - 40 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26641 3' -57.1 NC_005808.1 + 6427 0.66 0.588837
Target:  5'- ----uGCCGAC--GUgGGCCGguUCGCCa -3'
miRNA:   3'- aguucCGGCUGuuCAgCCGGC--AGCGG- -5'
26641 3' -57.1 NC_005808.1 + 6470 0.67 0.482804
Target:  5'- aCAuGGGCCGcgacuACAccgGGcCGGCCGgccugCGCCu -3'
miRNA:   3'- aGU-UCCGGC-----UGU---UCaGCCGGCa----GCGG- -5'
26641 3' -57.1 NC_005808.1 + 6912 0.76 0.137696
Target:  5'- -gGGGGCCuACGAaaaGGCCGUCGCCg -3'
miRNA:   3'- agUUCCGGcUGUUcagCCGGCAGCGG- -5'
26641 3' -57.1 NC_005808.1 + 7333 0.69 0.384159
Target:  5'- cCGAGGCCaagcagcaguucaaGACcuGggCGGCCGacaUCGCCg -3'
miRNA:   3'- aGUUCCGG--------------CUGuuCa-GCCGGC---AGCGG- -5'
26641 3' -57.1 NC_005808.1 + 7708 0.74 0.191026
Target:  5'- gCAAGgaGCCGGCGugGGUCGaGCCG-CGCCc -3'
miRNA:   3'- aGUUC--CGGCUGU--UCAGC-CGGCaGCGG- -5'
26641 3' -57.1 NC_005808.1 + 8016 0.68 0.451759
Target:  5'- cCGAGGCCacgGGCAAGcugucggaaauccUCGcGCCGguguUCGCCc -3'
miRNA:   3'- aGUUCCGG---CUGUUC-------------AGC-CGGC----AGCGG- -5'
26641 3' -57.1 NC_005808.1 + 8488 0.73 0.212493
Target:  5'- cUCAAGGCCguaGACAAGcgcaCGGCCcUgGCCg -3'
miRNA:   3'- -AGUUCCGG---CUGUUCa---GCCGGcAgCGG- -5'
26641 3' -57.1 NC_005808.1 + 8702 0.67 0.49201
Target:  5'- -gAAGGCCGGCGaccucgccaccgcAG-CGGCCGagaagCGCa -3'
miRNA:   3'- agUUCCGGCUGU-------------UCaGCCGGCa----GCGg -5'
26641 3' -57.1 NC_005808.1 + 8784 0.77 0.12668
Target:  5'- aCGcGGCgcaCGAUggGUCGGCCG-CGCCg -3'
miRNA:   3'- aGUuCCG---GCUGuuCAGCCGGCaGCGG- -5'
26641 3' -57.1 NC_005808.1 + 8850 0.72 0.261653
Target:  5'- --cGGGCCaGCGcGUUGGCCucgGUCGCCa -3'
miRNA:   3'- aguUCCGGcUGUuCAGCCGG---CAGCGG- -5'
26641 3' -57.1 NC_005808.1 + 9098 0.67 0.513794
Target:  5'- gCGAGGCCGuucuuGCcGGUgGGCagguaUCGCCa -3'
miRNA:   3'- aGUUCCGGC-----UGuUCAgCCGgc---AGCGG- -5'
26641 3' -57.1 NC_005808.1 + 9937 0.66 0.567097
Target:  5'- ---uGGCCGAgAAGcagCGcGCCGgUGCCa -3'
miRNA:   3'- aguuCCGGCUgUUCa--GC-CGGCaGCGG- -5'
26641 3' -57.1 NC_005808.1 + 10787 0.7 0.352126
Target:  5'- gCAAGGCgaCGACGcauucaAGcaaUCGGCCGagGCCg -3'
miRNA:   3'- aGUUCCG--GCUGU------UC---AGCCGGCagCGG- -5'
26641 3' -57.1 NC_005808.1 + 11037 0.77 0.122164
Target:  5'- ---uGGCCGaACAGGUggccgcagugucccCGGCUGUCGCCg -3'
miRNA:   3'- aguuCCGGC-UGUUCA--------------GCCGGCAGCGG- -5'
26641 3' -57.1 NC_005808.1 + 11157 0.67 0.502332
Target:  5'- --uGGGCCGccugcGCAcguugcgugcgcuGGUCGGCCGUgGUg -3'
miRNA:   3'- aguUCCGGC-----UGU-------------UCAGCCGGCAgCGg -5'
26641 3' -57.1 NC_005808.1 + 11407 0.69 0.395863
Target:  5'- cCAGGGUcuugagcagCGGCGAGcCGGCgugcagGUCGCCg -3'
miRNA:   3'- aGUUCCG---------GCUGUUCaGCCGg-----CAGCGG- -5'
26641 3' -57.1 NC_005808.1 + 12012 0.7 0.360595
Target:  5'- ---cGGCCaGCAGcgCGGCCGUgGCCg -3'
miRNA:   3'- aguuCCGGcUGUUcaGCCGGCAgCGG- -5'
26641 3' -57.1 NC_005808.1 + 12118 0.67 0.493037
Target:  5'- uUCAA--UCGGCAGGUUGGCgCGacgCGCCa -3'
miRNA:   3'- -AGUUccGGCUGUUCAGCCG-GCa--GCGG- -5'
26641 3' -57.1 NC_005808.1 + 12464 0.67 0.482804
Target:  5'- aUCAAGGCCGcauACAAGcgcgcaGGCaucgacUCGCCg -3'
miRNA:   3'- -AGUUCCGGC---UGUUCag----CCGgc----AGCGG- -5'
26641 3' -57.1 NC_005808.1 + 12619 0.71 0.296851
Target:  5'- gCGAGGCCGGCAAGaaauUCa-CCGaCGCCg -3'
miRNA:   3'- aGUUCCGGCUGUUC----AGccGGCaGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.