Results 21 - 40 of 114 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26641 | 3' | -57.1 | NC_005808.1 | + | 22773 | 0.67 | 0.513794 |
Target: 5'- -gAGGGCCGAUuGGUCaacgcccugcgGGCCGgucagcauggUGCCg -3' miRNA: 3'- agUUCCGGCUGuUCAG-----------CCGGCa---------GCGG- -5' |
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26641 | 3' | -57.1 | NC_005808.1 | + | 12118 | 0.67 | 0.493037 |
Target: 5'- uUCAA--UCGGCAGGUUGGCgCGacgCGCCa -3' miRNA: 3'- -AGUUccGGCUGUUCAGCCG-GCa--GCGG- -5' |
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26641 | 3' | -57.1 | NC_005808.1 | + | 3867 | 0.67 | 0.493037 |
Target: 5'- cCAGGcGCCGuCGcuguAGgccgCGcuGCCGUCGCCg -3' miRNA: 3'- aGUUC-CGGCuGU----UCa---GC--CGGCAGCGG- -5' |
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26641 | 3' | -57.1 | NC_005808.1 | + | 25504 | 0.67 | 0.493037 |
Target: 5'- gUCAGGGUCaGGCccgcgaugAGGUCGguuuuGCCGcCGCCg -3' miRNA: 3'- -AGUUCCGG-CUG--------UUCAGC-----CGGCaGCGG- -5' |
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26641 | 3' | -57.1 | NC_005808.1 | + | 11157 | 0.67 | 0.502332 |
Target: 5'- --uGGGCCGccugcGCAcguugcgugcgcuGGUCGGCCGUgGUg -3' miRNA: 3'- aguUCCGGC-----UGU-------------UCAGCCGGCAgCGg -5' |
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26641 | 3' | -57.1 | NC_005808.1 | + | 18905 | 0.67 | 0.503369 |
Target: 5'- gUCAucAGGUCGAUgAGGUCGGCgccCG-CGCUg -3' miRNA: 3'- -AGU--UCCGGCUG-UUCAGCCG---GCaGCGG- -5' |
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26641 | 3' | -57.1 | NC_005808.1 | + | 20730 | 0.67 | 0.503369 |
Target: 5'- aUC-AGGCCGACAug-CuGCUGgCGCCg -3' miRNA: 3'- -AGuUCCGGCUGUucaGcCGGCaGCGG- -5' |
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26641 | 3' | -57.1 | NC_005808.1 | + | 20222 | 0.67 | 0.513794 |
Target: 5'- cCGcGGCCGGCu-GUUGGCCuugggUGCCu -3' miRNA: 3'- aGUuCCGGCUGuuCAGCCGGca---GCGG- -5' |
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26641 | 3' | -57.1 | NC_005808.1 | + | 1033 | 0.67 | 0.524306 |
Target: 5'- -gAAGGCCacGGCcGG-CGGCagcauGUCGCCg -3' miRNA: 3'- agUUCCGG--CUGuUCaGCCGg----CAGCGG- -5' |
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26641 | 3' | -57.1 | NC_005808.1 | + | 38107 | 0.67 | 0.524306 |
Target: 5'- cUUGAGGCCGA--AGUCG-CCGaggCGCUg -3' miRNA: 3'- -AGUUCCGGCUguUCAGCcGGCa--GCGG- -5' |
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26641 | 3' | -57.1 | NC_005808.1 | + | 17159 | 0.67 | 0.524306 |
Target: 5'- cCAAGGcCCGGcCGAGaacCGcGCCGgcuUCGCCu -3' miRNA: 3'- aGUUCC-GGCU-GUUCa--GC-CGGC---AGCGG- -5' |
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26641 | 3' | -57.1 | NC_005808.1 | + | 27925 | 0.67 | 0.469656 |
Target: 5'- gCGAGcGCgGACAcguucuugagcagcGGcgCGGCCGgCGCCa -3' miRNA: 3'- aGUUC-CGgCUGU--------------UCa-GCCGGCaGCGG- -5' |
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26641 | 3' | -57.1 | NC_005808.1 | + | 24653 | 0.67 | 0.469656 |
Target: 5'- gCAAGGacacgccggacggcCCGACcguGGcCGGCC-UCGCCa -3' miRNA: 3'- aGUUCC--------------GGCUGu--UCaGCCGGcAGCGG- -5' |
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26641 | 3' | -57.1 | NC_005808.1 | + | 12464 | 0.67 | 0.482804 |
Target: 5'- aUCAAGGCCGcauACAAGcgcgcaGGCaucgacUCGCCg -3' miRNA: 3'- -AGUUCCGGC---UGUUCag----CCGgc----AGCGG- -5' |
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26641 | 3' | -57.1 | NC_005808.1 | + | 33850 | 0.67 | 0.490982 |
Target: 5'- gUCGAGGCgGuACuugguGUCGGCCuugauaccguccUCGCCg -3' miRNA: 3'- -AGUUCCGgC-UGuu---CAGCCGGc-----------AGCGG- -5' |
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26641 | 3' | -57.1 | NC_005808.1 | + | 6470 | 0.67 | 0.482804 |
Target: 5'- aCAuGGGCCGcgacuACAccgGGcCGGCCGgccugCGCCu -3' miRNA: 3'- aGU-UCCGGC-----UGU---UCaGCCGGCa----GCGG- -5' |
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26641 | 3' | -57.1 | NC_005808.1 | + | 8702 | 0.67 | 0.49201 |
Target: 5'- -gAAGGCCGGCGaccucgccaccgcAG-CGGCCGagaagCGCa -3' miRNA: 3'- agUUCCGGCUGU-------------UCaGCCGGCa----GCGg -5' |
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26641 | 3' | -57.1 | NC_005808.1 | + | 5657 | 0.67 | 0.512747 |
Target: 5'- aCGAGGCgGACAucgacacGGUggCGGCCagcguuggCGCCg -3' miRNA: 3'- aGUUCCGgCUGU-------UCA--GCCGGca------GCGG- -5' |
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26641 | 3' | -57.1 | NC_005808.1 | + | 24800 | 0.67 | 0.513794 |
Target: 5'- gUCGAGGCCGcGCAGGcgCGGUgGaaGCg -3' miRNA: 3'- -AGUUCCGGC-UGUUCa-GCCGgCagCGg -5' |
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26641 | 3' | -57.1 | NC_005808.1 | + | 32181 | 0.67 | 0.524306 |
Target: 5'- gUCGAGGUCGGCAg--CGGCCagggCGUUg -3' miRNA: 3'- -AGUUCCGGCUGUucaGCCGGca--GCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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