Results 21 - 40 of 114 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26641 | 3' | -57.1 | NC_005808.1 | + | 24302 | 0.73 | 0.223985 |
Target: 5'- gCGAGGacaucaUCGAgAAGaUCGGCCGcUCGCCg -3' miRNA: 3'- aGUUCC------GGCUgUUC-AGCCGGC-AGCGG- -5' |
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26641 | 3' | -57.1 | NC_005808.1 | + | 18463 | 0.73 | 0.229927 |
Target: 5'- gUCGcGGcGCCGGCGGcGUCGGCCGauUCGUCc -3' miRNA: 3'- -AGU-UC-CGGCUGUU-CAGCCGGC--AGCGG- -5' |
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26641 | 3' | -57.1 | NC_005808.1 | + | 23256 | 0.73 | 0.229927 |
Target: 5'- aCGAGGCCGACcuG-CuGCUGUCGCa -3' miRNA: 3'- aGUUCCGGCUGuuCaGcCGGCAGCGg -5' |
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26641 | 3' | -57.1 | NC_005808.1 | + | 4958 | 0.73 | 0.236002 |
Target: 5'- cCGuGGCCGAaaaCGAGgccGCCGUCGCCg -3' miRNA: 3'- aGUuCCGGCU---GUUCagcCGGCAGCGG- -5' |
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26641 | 3' | -57.1 | NC_005808.1 | + | 8850 | 0.72 | 0.261653 |
Target: 5'- --cGGGCCaGCGcGUUGGCCucgGUCGCCa -3' miRNA: 3'- aguUCCGGcUGUuCAGCCGG---CAGCGG- -5' |
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26641 | 3' | -57.1 | NC_005808.1 | + | 28615 | 0.72 | 0.267728 |
Target: 5'- gCGAuGGCCGGCGgccgcaaGGUCGuGCCGUucaacaagcagCGCCg -3' miRNA: 3'- aGUU-CCGGCUGU-------UCAGC-CGGCA-----------GCGG- -5' |
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26641 | 3' | -57.1 | NC_005808.1 | + | 37413 | 0.72 | 0.26841 |
Target: 5'- ---cGGCCGGCAGGUCGGg-GUCGgCa -3' miRNA: 3'- aguuCCGGCUGUUCAGCCggCAGCgG- -5' |
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26641 | 3' | -57.1 | NC_005808.1 | + | 800 | 0.71 | 0.275308 |
Target: 5'- aCcuGGCCGGCGuuGUCGGCaaaGcCGCCc -3' miRNA: 3'- aGuuCCGGCUGUu-CAGCCGg--CaGCGG- -5' |
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26641 | 3' | -57.1 | NC_005808.1 | + | 28448 | 0.71 | 0.282347 |
Target: 5'- gUCGAuuuCCGGCAcGUacaugaGGCCGUCGCCg -3' miRNA: 3'- -AGUUcc-GGCUGUuCAg-----CCGGCAGCGG- -5' |
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26641 | 3' | -57.1 | NC_005808.1 | + | 12619 | 0.71 | 0.296851 |
Target: 5'- gCGAGGCCGGCAAGaaauUCa-CCGaCGCCg -3' miRNA: 3'- aGUUCCGGCUGUUC----AGccGGCaGCGG- -5' |
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26641 | 3' | -57.1 | NC_005808.1 | + | 39835 | 0.71 | 0.296851 |
Target: 5'- gUCGAGGUguCGGCAguGGUCGGCaCGcccgagcagCGCCg -3' miRNA: 3'- -AGUUCCG--GCUGU--UCAGCCG-GCa--------GCGG- -5' |
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26641 | 3' | -57.1 | NC_005808.1 | + | 4383 | 0.71 | 0.304317 |
Target: 5'- gCGAcGGCCGACuuGUCGGCCuugaugaaaGCCg -3' miRNA: 3'- aGUU-CCGGCUGuuCAGCCGGcag------CGG- -5' |
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26641 | 3' | -57.1 | NC_005808.1 | + | 1324 | 0.71 | 0.304317 |
Target: 5'- cCAccAGGCCGACAAGcgCGaggaaGCCGUgGUCg -3' miRNA: 3'- aGU--UCCGGCUGUUCa-GC-----CGGCAgCGG- -5' |
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26641 | 3' | -57.1 | NC_005808.1 | + | 37840 | 0.7 | 0.327577 |
Target: 5'- gUCGGGGCCGGC------GCCGUCGUCg -3' miRNA: 3'- -AGUUCCGGCUGuucagcCGGCAGCGG- -5' |
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26641 | 3' | -57.1 | NC_005808.1 | + | 32135 | 0.7 | 0.327577 |
Target: 5'- gCGGGGCCGAUGAGcaUGGC-GUCGCa -3' miRNA: 3'- aGUUCCGGCUGUUCa-GCCGgCAGCGg -5' |
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26641 | 3' | -57.1 | NC_005808.1 | + | 3592 | 0.7 | 0.327577 |
Target: 5'- cCGcGGCCGcCAGuGUUGGCCGUguauucggaugCGCCa -3' miRNA: 3'- aGUuCCGGCuGUU-CAGCCGGCA-----------GCGG- -5' |
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26641 | 3' | -57.1 | NC_005808.1 | + | 20257 | 0.7 | 0.327577 |
Target: 5'- --uGGGUCGGCuguugcugcuGUUGGCCGUCGUUg -3' miRNA: 3'- aguUCCGGCUGuu--------CAGCCGGCAGCGG- -5' |
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26641 | 3' | -57.1 | NC_005808.1 | + | 38574 | 0.7 | 0.335617 |
Target: 5'- aUC-AGGCCGGcCAGGUgGGCgG-CGCUg -3' miRNA: 3'- -AGuUCCGGCU-GUUCAgCCGgCaGCGG- -5' |
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26641 | 3' | -57.1 | NC_005808.1 | + | 13509 | 0.7 | 0.335617 |
Target: 5'- cCGAGGCCGcCAAGcUGGCgGgccUGCCg -3' miRNA: 3'- aGUUCCGGCuGUUCaGCCGgCa--GCGG- -5' |
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26641 | 3' | -57.1 | NC_005808.1 | + | 13160 | 0.7 | 0.3438 |
Target: 5'- cUCGAuGUCGGCcaguGUCGGCCG-CGCUg -3' miRNA: 3'- -AGUUcCGGCUGuu--CAGCCGGCaGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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