miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26641 3' -57.1 NC_005808.1 + 41877 0.68 0.442951
Target:  5'- cCAGGcGCuCGAC---UUGGCCGUgGCCg -3'
miRNA:   3'- aGUUC-CG-GCUGuucAGCCGGCAgCGG- -5'
26641 3' -57.1 NC_005808.1 + 40283 0.68 0.43328
Target:  5'- uUCGAGGCgcaCGGCA---UGGCgGUCGCUg -3'
miRNA:   3'- -AGUUCCG---GCUGUucaGCCGgCAGCGG- -5'
26641 3' -57.1 NC_005808.1 + 39835 0.71 0.296851
Target:  5'- gUCGAGGUguCGGCAguGGUCGGCaCGcccgagcagCGCCg -3'
miRNA:   3'- -AGUUCCG--GCUGU--UCAGCCG-GCa--------GCGG- -5'
26641 3' -57.1 NC_005808.1 + 39657 0.66 0.567097
Target:  5'- -gAAGGCgCGGCGGGUCauaGCUGcUCGUCc -3'
miRNA:   3'- agUUCCG-GCUGUUCAGc--CGGC-AGCGG- -5'
26641 3' -57.1 NC_005808.1 + 38574 0.7 0.335617
Target:  5'- aUC-AGGCCGGcCAGGUgGGCgG-CGCUg -3'
miRNA:   3'- -AGuUCCGGCU-GUUCAgCCGgCaGCGG- -5'
26641 3' -57.1 NC_005808.1 + 38476 0.69 0.405021
Target:  5'- cUCGAuGGCgGGCAuGUUGGCCGcgagcacgUCGCg -3'
miRNA:   3'- -AGUU-CCGgCUGUuCAGCCGGC--------AGCGg -5'
26641 3' -57.1 NC_005808.1 + 38107 0.67 0.524306
Target:  5'- cUUGAGGCCGA--AGUCG-CCGaggCGCUg -3'
miRNA:   3'- -AGUUCCGGCUguUCAGCcGGCa--GCGG- -5'
26641 3' -57.1 NC_005808.1 + 37840 0.7 0.327577
Target:  5'- gUCGGGGCCGGC------GCCGUCGUCg -3'
miRNA:   3'- -AGUUCCGGCUGuucagcCGGCAGCGG- -5'
26641 3' -57.1 NC_005808.1 + 37675 0.68 0.462652
Target:  5'- cCGAGGgCaAgAAGcUGGUCGUCGCCg -3'
miRNA:   3'- aGUUCCgGcUgUUCaGCCGGCAGCGG- -5'
26641 3' -57.1 NC_005808.1 + 37569 0.66 0.534899
Target:  5'- aCAGgcGGCCGGCccagcguccGGUgCGGCUGgCGCCg -3'
miRNA:   3'- aGUU--CCGGCUGu--------UCA-GCCGGCaGCGG- -5'
26641 3' -57.1 NC_005808.1 + 37524 0.76 0.13393
Target:  5'- gCAAcGuGCCGcGCAGG-CGGCCGUCGCUg -3'
miRNA:   3'- aGUU-C-CGGC-UGUUCaGCCGGCAGCGG- -5'
26641 3' -57.1 NC_005808.1 + 37413 0.72 0.26841
Target:  5'- ---cGGCCGGCAGGUCGGg-GUCGgCa -3'
miRNA:   3'- aguuCCGGCUGUUCAGCCggCAGCgG- -5'
26641 3' -57.1 NC_005808.1 + 36301 0.78 0.102329
Target:  5'- -gAAGGCCGGggcgcuggguuacacCAGGUCGGCCGcCGCg -3'
miRNA:   3'- agUUCCGGCU---------------GUUCAGCCGGCaGCGg -5'
26641 3' -57.1 NC_005808.1 + 36003 0.68 0.462652
Target:  5'- cCGGGgaaGCCGuCGuAGUUGGCCuugagGUCGCCa -3'
miRNA:   3'- aGUUC---CGGCuGU-UCAGCCGG-----CAGCGG- -5'
26641 3' -57.1 NC_005808.1 + 35346 0.8 0.07393
Target:  5'- aCAAGGCCGGCGAcaUCGGCCcG-CGCCa -3'
miRNA:   3'- aGUUCCGGCUGUUc-AGCCGG-CaGCGG- -5'
26641 3' -57.1 NC_005808.1 + 34370 0.69 0.369204
Target:  5'- ----cGCCGACGAGggcaCGGCCG-CGCa -3'
miRNA:   3'- aguucCGGCUGUUCa---GCCGGCaGCGg -5'
26641 3' -57.1 NC_005808.1 + 33850 0.67 0.490982
Target:  5'- gUCGAGGCgGuACuugguGUCGGCCuugauaccguccUCGCCg -3'
miRNA:   3'- -AGUUCCGgC-UGuu---CAGCCGGc-----------AGCGG- -5'
26641 3' -57.1 NC_005808.1 + 33780 0.66 0.567097
Target:  5'- aUCAAGGCCGACAccaAGUaccGCC-UCGaCg -3'
miRNA:   3'- -AGUUCCGGCUGU---UCAgc-CGGcAGCgG- -5'
26641 3' -57.1 NC_005808.1 + 33175 0.7 0.3438
Target:  5'- uUCAGGGCCuuggguucaugGGCGAGgauguaGGCCGcCGCg -3'
miRNA:   3'- -AGUUCCGG-----------CUGUUCag----CCGGCaGCGg -5'
26641 3' -57.1 NC_005808.1 + 32325 0.73 0.21475
Target:  5'- aUCAAGGCCGGCgucccgacaaccgccGcccaGGUCGcuGCgGUCGCCg -3'
miRNA:   3'- -AGUUCCGGCUG---------------U----UCAGC--CGgCAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.