miRNA display CGI


Results 81 - 100 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26641 5' -54.3 NC_005808.1 + 18471 0.66 0.714228
Target:  5'- gCCGGCGGCGU--CGGCCGauuCGUCc-- -3'
miRNA:   3'- -GGCCGUUGCGuuGCCGGUc--GUAGuuc -5'
26641 5' -54.3 NC_005808.1 + 18975 0.68 0.590834
Target:  5'- gCGGaCGACGUAAC-GCCAGUcgcgcaggGUCAGGc -3'
miRNA:   3'- gGCC-GUUGCGUUGcCGGUCG--------UAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 19032 0.71 0.392705
Target:  5'- gCGGUAGCccugGUAGCGGCCgccggcGGCGUCGAu -3'
miRNA:   3'- gGCCGUUG----CGUUGCCGG------UCGUAGUUc -5'
26641 5' -54.3 NC_005808.1 + 19351 0.66 0.714228
Target:  5'- cCCaGGCGaccACGCuguucuACGGCgauucCAGCAUCGAc -3'
miRNA:   3'- -GG-CCGU---UGCGu-----UGCCG-----GUCGUAGUUc -5'
26641 5' -54.3 NC_005808.1 + 19538 0.7 0.440925
Target:  5'- aCCGGCAccugGCGCAagcugaacuAUGGCguGCAgccCGAGa -3'
miRNA:   3'- -GGCCGU----UGCGU---------UGCCGguCGUa--GUUC- -5'
26641 5' -54.3 NC_005808.1 + 19559 0.66 0.714228
Target:  5'- aCGGUu-CGCAGCGGCCuGCc----- -3'
miRNA:   3'- gGCCGuuGCGUUGCCGGuCGuaguuc -5'
26641 5' -54.3 NC_005808.1 + 19632 0.78 0.139853
Target:  5'- gCgGGCcGCGaCAuCGGCCAGCGUCGGGu -3'
miRNA:   3'- -GgCCGuUGC-GUuGCCGGUCGUAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 20016 0.68 0.568473
Target:  5'- cUCGGCAugGC-GC-GCCuGCAUCAc- -3'
miRNA:   3'- -GGCCGUugCGuUGcCGGuCGUAGUuc -5'
26641 5' -54.3 NC_005808.1 + 20212 0.73 0.291828
Target:  5'- uUGGCAGCGCccGCGGCCGGCuGUUg-- -3'
miRNA:   3'- gGCCGUUGCGu-UGCCGGUCG-UAGuuc -5'
26641 5' -54.3 NC_005808.1 + 20612 0.67 0.613342
Target:  5'- gCCaGGCGGCGUcGCaGGUCGGUGUCGGc -3'
miRNA:   3'- -GG-CCGUUGCGuUG-CCGGUCGUAGUUc -5'
26641 5' -54.3 NC_005808.1 + 20816 0.66 0.714228
Target:  5'- -aGcGCGGCGCAGCGccucuacggcGCCAGCAgCAu- -3'
miRNA:   3'- ggC-CGUUGCGUUGC----------CGGUCGUaGUuc -5'
26641 5' -54.3 NC_005808.1 + 20906 0.72 0.33956
Target:  5'- gCCGGCAACGUgucGAUGcCCAGCcuuUCGAGu -3'
miRNA:   3'- -GGCCGUUGCG---UUGCcGGUCGu--AGUUC- -5'
26641 5' -54.3 NC_005808.1 + 21197 0.69 0.524467
Target:  5'- aCGGCGGC-CAAgcUGGgCAGCGUCGAu -3'
miRNA:   3'- gGCCGUUGcGUU--GCCgGUCGUAGUUc -5'
26641 5' -54.3 NC_005808.1 + 21276 0.73 0.291828
Target:  5'- gUCGGCGuaagugucgGCcCAGCGGUCGGCGUCGAa -3'
miRNA:   3'- -GGCCGU---------UGcGUUGCCGGUCGUAGUUc -5'
26641 5' -54.3 NC_005808.1 + 21403 0.85 0.047236
Target:  5'- uUGGCAaccuggGCGCggUGGCCGGCAUCAAGc -3'
miRNA:   3'- gGCCGU------UGCGuuGCCGGUCGUAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 21814 0.69 0.502947
Target:  5'- aCCGGCAguuGCAGCGGCgGGUugcucuuguaGUCGAu -3'
miRNA:   3'- -GGCCGUug-CGUUGCCGgUCG----------UAGUUc -5'
26641 5' -54.3 NC_005808.1 + 22315 0.71 0.392705
Target:  5'- gCCGGCGaauACGCcaucGCGGCCGacaaccagggccGCGUCAAu -3'
miRNA:   3'- -GGCCGU---UGCGu---UGCCGGU------------CGUAGUUc -5'
26641 5' -54.3 NC_005808.1 + 22390 0.69 0.492332
Target:  5'- cUCGGC-GCGUucggcACGGCCAGCAgCAu- -3'
miRNA:   3'- -GGCCGuUGCGu----UGCCGGUCGUaGUuc -5'
26641 5' -54.3 NC_005808.1 + 22536 0.73 0.299405
Target:  5'- aCGcGCAGCGCGcGCGuGCCGGUguuGUCGAGg -3'
miRNA:   3'- gGC-CGUUGCGU-UGC-CGGUCG---UAGUUC- -5'
26641 5' -54.3 NC_005808.1 + 22888 0.71 0.391776
Target:  5'- gUCGGCAGCGCGGCgaagucgGGCCAGUccggCAc- -3'
miRNA:   3'- -GGCCGUUGCGUUG-------CCGGUCGua--GUuc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.