Results 81 - 100 of 181 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26641 | 5' | -54.3 | NC_005808.1 | + | 18471 | 0.66 | 0.714228 |
Target: 5'- gCCGGCGGCGU--CGGCCGauuCGUCc-- -3' miRNA: 3'- -GGCCGUUGCGuuGCCGGUc--GUAGuuc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 18975 | 0.68 | 0.590834 |
Target: 5'- gCGGaCGACGUAAC-GCCAGUcgcgcaggGUCAGGc -3' miRNA: 3'- gGCC-GUUGCGUUGcCGGUCG--------UAGUUC- -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 19032 | 0.71 | 0.392705 |
Target: 5'- gCGGUAGCccugGUAGCGGCCgccggcGGCGUCGAu -3' miRNA: 3'- gGCCGUUG----CGUUGCCGG------UCGUAGUUc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 19351 | 0.66 | 0.714228 |
Target: 5'- cCCaGGCGaccACGCuguucuACGGCgauucCAGCAUCGAc -3' miRNA: 3'- -GG-CCGU---UGCGu-----UGCCG-----GUCGUAGUUc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 19538 | 0.7 | 0.440925 |
Target: 5'- aCCGGCAccugGCGCAagcugaacuAUGGCguGCAgccCGAGa -3' miRNA: 3'- -GGCCGU----UGCGU---------UGCCGguCGUa--GUUC- -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 19559 | 0.66 | 0.714228 |
Target: 5'- aCGGUu-CGCAGCGGCCuGCc----- -3' miRNA: 3'- gGCCGuuGCGUUGCCGGuCGuaguuc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 19632 | 0.78 | 0.139853 |
Target: 5'- gCgGGCcGCGaCAuCGGCCAGCGUCGGGu -3' miRNA: 3'- -GgCCGuUGC-GUuGCCGGUCGUAGUUC- -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 20016 | 0.68 | 0.568473 |
Target: 5'- cUCGGCAugGC-GC-GCCuGCAUCAc- -3' miRNA: 3'- -GGCCGUugCGuUGcCGGuCGUAGUuc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 20212 | 0.73 | 0.291828 |
Target: 5'- uUGGCAGCGCccGCGGCCGGCuGUUg-- -3' miRNA: 3'- gGCCGUUGCGu-UGCCGGUCG-UAGuuc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 20612 | 0.67 | 0.613342 |
Target: 5'- gCCaGGCGGCGUcGCaGGUCGGUGUCGGc -3' miRNA: 3'- -GG-CCGUUGCGuUG-CCGGUCGUAGUUc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 20816 | 0.66 | 0.714228 |
Target: 5'- -aGcGCGGCGCAGCGccucuacggcGCCAGCAgCAu- -3' miRNA: 3'- ggC-CGUUGCGUUGC----------CGGUCGUaGUuc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 20906 | 0.72 | 0.33956 |
Target: 5'- gCCGGCAACGUgucGAUGcCCAGCcuuUCGAGu -3' miRNA: 3'- -GGCCGUUGCG---UUGCcGGUCGu--AGUUC- -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 21197 | 0.69 | 0.524467 |
Target: 5'- aCGGCGGC-CAAgcUGGgCAGCGUCGAu -3' miRNA: 3'- gGCCGUUGcGUU--GCCgGUCGUAGUUc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 21276 | 0.73 | 0.291828 |
Target: 5'- gUCGGCGuaagugucgGCcCAGCGGUCGGCGUCGAa -3' miRNA: 3'- -GGCCGU---------UGcGUUGCCGGUCGUAGUUc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 21403 | 0.85 | 0.047236 |
Target: 5'- uUGGCAaccuggGCGCggUGGCCGGCAUCAAGc -3' miRNA: 3'- gGCCGU------UGCGuuGCCGGUCGUAGUUC- -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 21814 | 0.69 | 0.502947 |
Target: 5'- aCCGGCAguuGCAGCGGCgGGUugcucuuguaGUCGAu -3' miRNA: 3'- -GGCCGUug-CGUUGCCGgUCG----------UAGUUc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 22315 | 0.71 | 0.392705 |
Target: 5'- gCCGGCGaauACGCcaucGCGGCCGacaaccagggccGCGUCAAu -3' miRNA: 3'- -GGCCGU---UGCGu---UGCCGGU------------CGUAGUUc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 22390 | 0.69 | 0.492332 |
Target: 5'- cUCGGC-GCGUucggcACGGCCAGCAgCAu- -3' miRNA: 3'- -GGCCGuUGCGu----UGCCGGUCGUaGUuc -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 22536 | 0.73 | 0.299405 |
Target: 5'- aCGcGCAGCGCGcGCGuGCCGGUguuGUCGAGg -3' miRNA: 3'- gGC-CGUUGCGU-UGC-CGGUCG---UAGUUC- -5' |
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26641 | 5' | -54.3 | NC_005808.1 | + | 22888 | 0.71 | 0.391776 |
Target: 5'- gUCGGCAGCGCGGCgaagucgGGCCAGUccggCAc- -3' miRNA: 3'- -GGCCGUUGCGUUG-------CCGGUCGua--GUuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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